Gene name: GPC1
Reference locus (S288C): YGR149W
Gene biotype: protein_coding
Description: Uncharacterized membrane protein YGR149W; Glycerophosphocholine acyltransferase (GPCAT); involved in in phosphatidylcholine (PC) synthesis; uses acetyl-CoA to acylate glycero-3-phosphocholine to yield lyso-PC; also catalyzes acylation of glycerophosphoethanolamine with acyl-CoA; predicted to be an integal membrane protein
Top 10 interactors (score): NOP4 (0.958); ALE1 (0.925); GIT1 (0.777); GDE1 (0.774); TRM3 (0.744); CST26 (0.695); TRM44 (0.682); YGR026W (0.682); PTR2 (0.622); MSC1 (0.613); SCT1 (0.599); PLB1 (0.577); BNA4 (0.574); VNX1 (0.574); LRO1 (0.568); MRS6 (0.567); DRE2 (0.555); SPO14 (0.458); PBR1 (0.449); YGL039W (0.448)
Homologues (species, bitscore): AT5G35460 (Arabidopsis thaliana, 95.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:768731-770029:+ | gene-YGR149W_AKU4011 | rna-NM_001181278.1_AKU4011 | cds-NP_011665.1_AKU4011 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:46649-47947:+ | gene-YGR149W_BG1 | rna-NM_001181278.1_BG1 | cds-NP_011665.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:774199-775497:+ | gene-YGR149W_Bruggeman | rna-NM_001181278.1_Bruggeman | cds-NP_011665.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:770156-771454:+ | gene-YGR149W_CAT1 | rna-NM_001181278.1_CAT1 | cds-NP_011665.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:769465-770763:+ | gene-YGR149W_CBS1585 | rna-NM_001181278.1_CBS1585 | cds-NP_011665.1_CBS1585 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:773117-774415:+ | gene-YGR149W_CBS436 | rna-NM_001181278.1_CBS436 | cds-NP_011665.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:760485-761783:+ | gene-YGR149W_CBS6412 | rna-NM_001181278.1_CBS6412 | cds-NP_011665.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:766323-767621:+ | gene-YGR149W_CBS6413 | rna-NM_001181278.1_CBS6413 | cds-NP_011665.1_CBS6413 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:788764-790062:+ | gene-YGR149W_CENPK1137D | rna-NM_001181278.1_CENPK1137D | cds-NP_011665.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:755034-756332:+ | gene-YGR149W_EthanolRed | rna-NM_001181278.1_EthanolRed | cds-NP_011665.1_EthanolRed | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:759122-760420:+ | gene-YGR149W_FaliES1 | rna-NM_001181278.1_FaliES1 | cds-NP_011665.1_FaliES1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:1407-2705:+ | gene-YGR149W_JAY291 | rna-NM_001181278.1_JAY291 | cds-NP_011665.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:771941-773239:+ | gene-YGR149W_MUCL30387 | rna-NM_001181278.1_MUCL30387 | cds-NP_011665.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:771633-772931:+ | gene-YGR149W_MUCL30388 | rna-NM_001181278.1_MUCL30388 | cds-NP_011665.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:764941-766239:+ | gene-YGR149W_MUCL39482 | rna-NM_001181278.1_MUCL39482 | cds-NP_011665.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:779882-781180:+ | gene-YGR149W_MUCL42920 | rna-NM_001181278.1_MUCL42920 | cds-NP_011665.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:789031-790329:+ | gene-YGR149W_NCIM3186 | rna-NM_001181278.1_NCIM3186 | cds-NP_011665.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:760141-761439:+ | gene-YGR149W_NCYC1407 | rna-NM_001181278.1_NCYC1407 | cds-NP_011665.1_NCYC1407 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:779110-780408:+ | gene-YGR149W_PE2H3 | rna-NM_001181278.1_PE2H3 | cds-NP_011665.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:784220-785518:+ | gene-YGR149W_PE2H4 | rna-NM_001181278.1_PE2H4 | cds-NP_011665.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:789031-790329:+ | gene-YGR149W_S288C | rna-NM_001181278.1_S288C | cds-NP_011665.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:24033-25331:+ | gene-YGR149W_SA1 | rna-NM_001181278.1_SA1 | cds-NP_011665.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:779745-781043:+ | gene-YGR149W_ThermosaccDry | rna-NM_001181278.1_ThermosaccDry | cds-NP_011665.1_ThermosaccDry | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:884017-885315:+ | gene-YGR149W_VR1 | rna-NM_001181278.1_VR1 | cds-NP_011665.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:81593-82891:+ | gene-YGR149W_ZTW1 | rna-NM_001181278.1_ZTW1 | cds-NP_011665.1_ZTW1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:769032-770330:+ | gene-YGR149W_Sparadoxus | rna-NM_001181278.1_Sparadoxus | cds-NP_011665.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |