GMH1 (YKR030W)


Gene profile

Gene name: GMH1
Reference locus (S288C): YKR030W
Gene biotype: protein_coding

Description: Golgi membrane protein of unknown function; interacts with Gea1p and Gea2p; required for localization of Gea2p; computational analysis suggests a possible role in either cell wall synthesis or protein-vacuolar targeting; Belongs to the unc-50 family

Top 10 interactors (score): GEA1 (0.921); GEA2 (0.842); SEC7 (0.747); YEL043W (0.746); NNF2 (0.746); SFT2 (0.738); ARL1 (0.729); YPT6 (0.661); IFM1 (0.655); RPS16B (0.618); RER1 (0.617); MTC2 (0.616); DLT1 (0.612); ARF1 (0.598); EMC6 (0.593); GDT1 (0.592); COG6 (0.587); COG8 (0.583); MAY24 (0.572); RPS16A (0.568)

Homologues (species, bitscore): UNC50 (Homo sapiens, 152.1); Unc50 (Mus musculus, 151.4); unc50 (Danio rerio, 140.2); unc50 (Xenopus tropicalis, 155.6); CG9773 (Drosophila melanogaster, 121.3); unc-50 (Caenorhabditis elegans, 117.5); AT2G15240 (Arabidopsis thaliana, 125.6)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005305.1:485944-486765:+ gene-YKR030W_AKU4011 rna-NM_001179820.1_AKU4011 cds-NP_012955.1_AKU4011 99.8 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000113.1:156708-157529:- gene-YKR030W_BG1 rna-NM_001179820.1_BG1 cds-NP_012955.1_BG1 99.7 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005513.1:507874-508695:+ gene-YKR030W_Bruggeman rna-NM_001179820.1_Bruggeman cds-NP_012955.1_Bruggeman 99.7 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005529.1:503371-504192:+ gene-YKR030W_CAT1 rna-NM_001179820.1_CAT1 cds-NP_012955.1_CAT1 99.7 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005369.1:498684-499505:+ gene-YKR030W_CBS1585 rna-NM_001179820.1_CBS1585 cds-NP_012955.1_CBS1585 99.8 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005353.1:497525-498346:+ gene-YKR030W_CBS436 rna-NM_001179820.1_CBS436 cds-NP_012955.1_CBS436 99.7 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005337.1:482845-483666:+ gene-YKR030W_CBS6412 rna-NM_001179820.1_CBS6412 cds-NP_012955.1_CBS6412 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005321.1:498513-499334:+ gene-YKR030W_CBS6413 rna-NM_001179820.1_CBS6413 cds-NP_012955.1_CBS6413 99.8 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001532.1:500024-500845:+ gene-YKR030W_CENPK1137D rna-NM_001179820.1_CENPK1137D cds-NP_012955.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005481.1:496210-497031:+ gene-YKR030W_EthanolRed rna-NM_001179820.1_EthanolRed cds-NP_012955.1_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005545.1:499343-500164:+ gene-YKR030W_FaliES1 rna-NM_001179820.1_FaliES1 cds-NP_012955.1_FaliES1 99.7 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000077.1:53581-54402:- gene-YKR030W_JAY291 rna-NM_001179820.1_JAY291 cds-NP_012955.1_JAY291 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005417.1:508279-509100:+ gene-YKR030W_MUCL30387 rna-NM_001179820.1_MUCL30387 cds-NP_012955.1_MUCL30387 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005449.1:502634-503455:+ gene-YKR030W_MUCL30388 rna-NM_001179820.1_MUCL30388 cds-NP_012955.1_MUCL30388 99.7 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005289.1:498002-498823:+ gene-YKR030W_MUCL39482 rna-NM_001179820.1_MUCL39482 cds-NP_012955.1_MUCL39482 99.8 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005433.1:504037-504858:+ gene-YKR030W_MUCL42920 rna-NM_001179820.1_MUCL42920 cds-NP_012955.1_MUCL42920 99.5 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011820.1:500271-501092:+ gene-YKR030W_NCIM3186 rna-NM_001179820.1_NCIM3186 cds-NP_012955.1_NCIM3186 99.5 100.0 Verified 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005273.1:498208-499029:+ gene-YKR030W_NCYC1407 rna-NM_001179820.1_NCYC1407 cds-NP_012955.1_NCYC1407 99.8 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994150.1:523209-524030:+ gene-YKR030W_PE2H3 rna-NM_001179820.1_PE2H3 cds-NP_012955.1_PE2H3 99.7 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999882.1:507932-508753:+ gene-YKR030W_PE2H4 rna-NM_001179820.1_PE2H4 cds-NP_012955.1_PE2H4 99.7 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:500282-501103:+ gene-YKR030W_S288C rna-NM_001179820.1_S288C cds-NP_012955.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000078.1:12646-13467:- gene-YKR030W_SA1 rna-NM_001179820.1_SA1 cds-NP_012955.1_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005497.1:498596-499417:+ gene-YKR030W_ThermosaccDry rna-NM_001179820.1_ThermosaccDry cds-NP_012955.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005465.1:498229-499050:+ gene-YKR030W_VR1 rna-NM_001179820.1_VR1 cds-NP_012955.1_VR1 99.7 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:496643-497464:+ gene-YKR030W_ZTW1 rna-NM_001179820.1_ZTW1 cds-NP_012955.1_ZTW1 99.8 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047497.1:521934-522755:+ gene-YKR030W_Sparadoxus rna-NM_001179820.1_Sparadoxus cds-NP_012955.1_Sparadoxus 89.1 100.0 Verified 1 1 1 False True False False False

Additional files