Gene name: GMC2
Reference locus (S288C): YLR445W
Gene biotype: protein_coding
Description: Grand meiotic recombination cluster protein 2; Protein involved in meiotic crossing over; component of the Synaptonemal Complex (SC) along with Ecm11p; required for the efficient loading of the SC transverse filament protein, Zip1p; promotes SUMOylation of Ecm11p; mutants are delayed in meiotic nuclear division and are defective in synaptonemal complex assembly; transcription is regulated by Ume6p and induced in response to alpha factor
Top 10 interactors (score): ECM11 (0.975); GMC1 (0.892); ZIP1 (0.843); SPO11 (0.826); SPO16 (0.813); RED1 (0.797); ZIP2 (0.779); SPO22 (0.773); CST9 (0.747); YHR202W (0.746); YMR147W (0.707); YDR018C (0.699); MSH4 (0.698); PHO92 (0.695); YHR127W (0.679); HOP2 (0.637); YOL131W (0.631); HOP1 (0.621); YKR005C (0.617); YML6 (0.616)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:962454-963102:+ | gene-YLR445W_AKU4011 | rna-NM_001182333.3_AKU4011 | cds-NP_013550.4_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:194921-195569:+ | gene-YLR445W_BG1 | rna-NM_001182333.3_BG1 | cds-NP_013550.4_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:1000765-1001413:+ | gene-YLR445W_Bruggeman | rna-NM_001182333.3_Bruggeman | cds-NP_013550.4_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:996767-997415:+ | gene-YLR445W_CAT1 | rna-NM_001182333.3_CAT1 | cds-NP_013550.4_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:998048-998696:+ | gene-YLR445W_CBS1585 | rna-NM_001182333.3_CBS1585 | cds-NP_013550.4_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:987398-988046:+ | gene-YLR445W_CBS436 | rna-NM_001182333.3_CBS436 | cds-NP_013550.4_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1034086-1034734:+ | gene-YLR445W_CBS6412 | rna-NM_001182333.3_CBS6412 | cds-NP_013550.4_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:998834-999482:+ | gene-YLR445W_CBS6413 | rna-NM_001182333.3_CBS6413 | cds-NP_013550.4_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1008805-1009448:+ | gene-YLR445W_CENPK1137D | rna-NM_001182333.3_CENPK1137D | cds-NP_013550.4_CENPK1137D | 99.1 | 99.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:955477-956125:+ | gene-YLR445W_EthanolRed | rna-NM_001182333.3_EthanolRed | cds-NP_013550.4_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:990748-991396:+ | gene-YLR445W_FaliES1 | rna-NM_001182333.3_FaliES1 | cds-NP_013550.4_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:27285-27933:- | gene-YLR445W_JAY291 | rna-NM_001182333.3_JAY291 | cds-NP_013550.4_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:999617-1000265:+ | gene-YLR445W_MUCL30387 | rna-NM_001182333.3_MUCL30387 | cds-NP_013550.4_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1006974-1007622:+ | gene-YLR445W_MUCL30388 | rna-NM_001182333.3_MUCL30388 | cds-NP_013550.4_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:999268-999916:+ | gene-YLR445W_MUCL39482 | rna-NM_001182333.3_MUCL39482 | cds-NP_013550.4_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:999765-1000413:+ | gene-YLR445W_MUCL42920 | rna-NM_001182333.3_MUCL42920 | cds-NP_013550.4_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1024163-1024811:+ | gene-YLR445W_NCIM3186 | rna-NM_001182333.3_NCIM3186 | cds-NP_013550.4_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1008699-1009347:+ | gene-YLR445W_NCYC1407 | rna-NM_001182333.3_NCYC1407 | cds-NP_013550.4_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:995153-995801:+ | gene-YLR445W_PE2H3 | rna-NM_001182333.3_PE2H3 | cds-NP_013550.4_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:994897-995545:+ | gene-YLR445W_PE2H4 | rna-NM_001182333.3_PE2H4 | cds-NP_013550.4_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1024189-1024837:+ | gene-YLR445W_S288C | rna-NM_001182333.3_S288C | cds-NP_013550.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:35113-35761:- | gene-YLR445W_SA1 | rna-NM_001182333.3_SA1 | cds-NP_013550.4_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:993827-994475:+ | gene-YLR445W_ThermosaccDry | rna-NM_001182333.3_ThermosaccDry | cds-NP_013550.4_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1000257-1000905:+ | gene-YLR445W_VR1 | rna-NM_001182333.3_VR1 | cds-NP_013550.4_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:324099-324747:+ | gene-YLR445W_ZTW1 | rna-NM_001182333.3_ZTW1 | cds-NP_013550.4_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:973165-973811:+ | gene-YLR445W_Sparadoxus | rna-NM_001182333.3_Sparadoxus | cds-NP_013550.4_Sparadoxus | 89.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |