Gene name: GLT1
Reference locus (S288C): YDL171C
Gene biotype: protein_coding
Description: NAD(+)-dependent glutamate synthase (GOGAT); synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source; assembles into filaments as cells approach stationary phase and under cytosolic acidification and starvation conditions
Top 10 interactors (score): GLN1 (0.999); GDH3 (0.999); GDH1 (0.999); GDH2 (0.991); GCV2 (0.968); ADE4 (0.968); GCV1 (0.959); CPA1 (0.956); CPA2 (0.95); GAD1 (0.945); URA2 (0.941); GFA1 (0.937); PUT2 (0.932); YMR084W (0.93); IDH1 (0.914); IDH2 (0.912); NIT3 (0.91); CIT1 (0.908); KGD1 (0.9); PRO2 (0.896)
Homologues (species, bitscore): DPYD (Homo sapiens, 83.2); Dpyd (Mus musculus, 84.7); dpydb (Danio rerio, 92.0); ENSXETP00000018792 (Xenopus tropicalis, 62.0); CG9674 (Drosophila melanogaster, 2078.5); W07E11.1 (Caenorhabditis elegans, 1949.1); GLT1 (Arabidopsis thaliana, 2109.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:133619-140056:- | gene-YDL171C_AKU4011 | rna-NM_001180231.1_AKU4011 | cds-NP_010110.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:409674-416111:+ | gene-YDL171C_BG1 | rna-NM_001180231.1_BG1 | cds-NP_010110.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:149680-156117:- | gene-YDL171C_Bruggeman | rna-NM_001180231.1_Bruggeman | cds-NP_010110.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:147990-154427:- | gene-YDL171C_CAT1 | rna-NM_001180231.1_CAT1 | cds-NP_010110.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:131657-138094:- | gene-YDL171C_CBS1585 | rna-NM_001180231.1_CBS1585 | cds-NP_010110.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:148610-155047:- | gene-YDL171C_CBS436 | rna-NM_001180231.1_CBS436 | cds-NP_010110.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:131220-137657:- | gene-YDL171C_CBS6412 | rna-NM_001180231.1_CBS6412 | cds-NP_010110.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:150031-156468:- | gene-YDL171C_CBS6413 | rna-NM_001180231.1_CBS6413 | cds-NP_010110.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:147876-154313:- | gene-YDL171C_CENPK1137D | rna-NM_001180231.1_CENPK1137D | cds-NP_010110.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:145033-151470:- | gene-YDL171C_EthanolRed | rna-NM_001180231.1_EthanolRed | cds-NP_010110.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:150359-156796:- | gene-YDL171C_FaliES1 | rna-NM_001180231.1_FaliES1 | cds-NP_010110.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:62720-69157:+ | gene-YDL171C_JAY291 | rna-NM_001180231.1_JAY291 | cds-NP_010110.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:147977-154414:- | gene-YDL171C_MUCL30387 | rna-NM_001180231.1_MUCL30387 | cds-NP_010110.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:139626-146063:- | gene-YDL171C_MUCL30388 | rna-NM_001180231.1_MUCL30388 | cds-NP_010110.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:132799-139236:- | gene-YDL171C_MUCL39482 | rna-NM_001180231.1_MUCL39482 | cds-NP_010110.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000307.1:30137-36574:+ | gene-YDL171C_MUCL42920 | rna-NM_001180231.1_MUCL42920 | cds-NP_010110.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:149126-155563:- | gene-YDL171C_NCIM3186 | rna-NM_001180231.1_NCIM3186 | cds-NP_010110.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:132688-139125:- | gene-YDL171C_NCYC1407 | rna-NM_001180231.1_NCYC1407 | cds-NP_010110.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:139978-146415:- | gene-YDL171C_PE2H3 | rna-NM_001180231.1_PE2H3 | cds-NP_010110.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:139982-146419:- | gene-YDL171C_PE2H4 | rna-NM_001180231.1_PE2H4 | cds-NP_010110.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:149203-155640:- | gene-YDL171C_S288C | rna-NM_001180231.1_S288C | cds-NP_010110.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:14755-21192:- | gene-YDL171C_SA1 | rna-NM_001180231.1_SA1 | cds-NP_010110.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:150119-156556:- | gene-YDL171C_ThermosaccDry | rna-NM_001180231.1_ThermosaccDry | cds-NP_010110.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:150749-157186:- | gene-YDL171C_VR1 | rna-NM_001180231.1_VR1 | cds-NP_010110.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:148298-154735:- | gene-YDL171C_ZTW1 | rna-NM_001180231.1_ZTW1 | cds-NP_010110.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:150464-156901:- | gene-YDL171C_Sparadoxus | rna-NM_001180231.1_Sparadoxus | cds-NP_010110.1_Sparadoxus | 92.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |