Gene name: GLN3
Reference locus (S288C): YER040W
Gene biotype: protein_coding
Description: Nitrogen regulatory protein GLN3; Transcriptional activator of genes regulated by nitrogen catabolite repression; localization and activity regulated by quality of nitrogen source and Ure2p
Top 10 interactors (score): URE2 (0.999); TOR1 (0.985); GAT1 (0.961); GCN4 (0.957); SIT4 (0.928); MEP2 (0.921); TAP42 (0.899); GLN1 (0.897); GAP1 (0.891); DAL5 (0.865); RTG3 (0.842); SNF1 (0.831); MSN2 (0.819); MSN4 (0.808); DAL1 (0.8); NPR1 (0.795); TOR2 (0.789); ASP3-1 (0.787); MEP1 (0.787); GCN5 (0.786)
Homologues (species, bitscore): GATA5 (Homo sapiens, 78.6); Gata4 (Mus musculus, 72.0); gata4 (Danio rerio, 72.8); gata4 (Xenopus tropicalis, 75.5); srp (Drosophila melanogaster, 78.6); elt-1 (Caenorhabditis elegans, 74.3); GATA13 (Arabidopsis thaliana, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:223854-226046:+ | gene-YER040W_AKU4011 | rna-NM_001178931.3_AKU4011 | cds-NP_010958.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:199670-201862:- | gene-YER040W_BG1 | rna-NM_001178931.3_BG1 | cds-NP_010958.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:232707-234899:+ | gene-YER040W_Bruggeman | rna-NM_001178931.3_Bruggeman | cds-NP_010958.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:226823-229015:+ | gene-YER040W_CAT1 | rna-NM_001178931.3_CAT1 | cds-NP_010958.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:223763-225955:+ | gene-YER040W_CBS1585 | rna-NM_001178931.3_CBS1585 | cds-NP_010958.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:225707-227899:+ | gene-YER040W_CBS436 | rna-NM_001178931.3_CBS436 | cds-NP_010958.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:223624-225816:+ | gene-YER040W_CBS6412 | rna-NM_001178931.3_CBS6412 | cds-NP_010958.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:229234-231426:+ | gene-YER040W_CBS6413 | rna-NM_001178931.3_CBS6413 | cds-NP_010958.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:227990-230182:+ | gene-YER040W_CENPK1137D | rna-NM_001178931.3_CENPK1137D | cds-NP_010958.3_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:224458-226650:+ | gene-YER040W_EthanolRed | rna-NM_001178931.3_EthanolRed | cds-NP_010958.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:224721-226913:+ | gene-YER040W_FaliES1 | rna-NM_001178931.3_FaliES1 | cds-NP_010958.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:22485-24677:+ | gene-YER040W_JAY291 | rna-NM_001178931.3_JAY291 | cds-NP_010958.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:228154-230346:+ | gene-YER040W_MUCL30387 | rna-NM_001178931.3_MUCL30387 | cds-NP_010958.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:224372-226564:+ | gene-YER040W_MUCL30388 | rna-NM_001178931.3_MUCL30388 | cds-NP_010958.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:222805-224997:+ | gene-YER040W_MUCL39482 | rna-NM_001178931.3_MUCL39482 | cds-NP_010958.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:229881-232073:+ | gene-YER040W_MUCL42920 | rna-NM_001178931.3_MUCL42920 | cds-NP_010958.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:229794-231986:+ | gene-YER040W_NCIM3186 | rna-NM_001178931.3_NCIM3186 | cds-NP_010958.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:227867-230059:+ | gene-YER040W_NCYC1407 | rna-NM_001178931.3_NCYC1407 | cds-NP_010958.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:238496-240688:+ | gene-YER040W_PE2H3 | rna-NM_001178931.3_PE2H3 | cds-NP_010958.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:228437-230629:+ | gene-YER040W_PE2H4 | rna-NM_001178931.3_PE2H4 | cds-NP_010958.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:229795-231987:+ | gene-YER040W_S288C | rna-NM_001178931.3_S288C | cds-NP_010958.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:11699-13891:- | gene-YER040W_SA1 | rna-NM_001178931.3_SA1 | cds-NP_010958.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:225493-227685:+ | gene-YER040W_ThermosaccDry | rna-NM_001178931.3_ThermosaccDry | cds-NP_010958.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:224592-226784:+ | gene-YER040W_VR1 | rna-NM_001178931.3_VR1 | cds-NP_010958.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:222705-224897:+ | gene-YER040W_ZTW1 | rna-NM_001178931.3_ZTW1 | cds-NP_010958.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:226521-228713:+ | gene-YER040W_Sparadoxus | rna-NM_001178931.3_Sparadoxus | cds-NP_010958.3_Sparadoxus | 91.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |