Gene name: GLE2
Reference locus (S288C): YER107C
Gene biotype: protein_coding
Description: Nucleoporin GLE2; RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1
Top 10 interactors (score): NUP100 (0.999); NUP145 (0.999); NUP116 (0.999); MEX67 (0.999); GLE1 (0.998); NUP57 (0.996); NUP42 (0.996); NUP159 (0.996); NSP1 (0.993); SEH1 (0.989); NUP188 (0.987); NUP192 (0.987); NIC96 (0.984); NUP82 (0.984); NUP85 (0.975); NUP49 (0.974); YRA1 (0.972); BUB1 (0.972); SEC13 (0.972); ASM4 (0.969)
Homologues (species, bitscore): RAE1 (Homo sapiens, 281.6); Rae1 (Mus musculus, 277.7); rae1 (Danio rerio, 284.6); rae1 (Xenopus tropicalis, 180.6); Rae1 (Drosophila melanogaster, 287.7); rae-1 (Caenorhabditis elegans, 237.3); RAE1 (Arabidopsis thaliana, 287.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:367337-368434:- | gene-YER107C_AKU4011 | rna-NM_001178998.3_AKU4011 | cds-NP_011033.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:57173-58270:+ | gene-YER107C_BG1 | rna-NM_001178998.3_BG1 | cds-NP_011033.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:377812-378909:- | gene-YER107C_Bruggeman | rna-NM_001178998.3_Bruggeman | cds-NP_011033.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:372344-373441:- | gene-YER107C_CAT1 | rna-NM_001178998.3_CAT1 | cds-NP_011033.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:366732-367829:- | gene-YER107C_CBS1585 | rna-NM_001178998.3_CBS1585 | cds-NP_011033.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:369436-370533:- | gene-YER107C_CBS436 | rna-NM_001178998.3_CBS436 | cds-NP_011033.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:365806-366903:- | gene-YER107C_CBS6412 | rna-NM_001178998.3_CBS6412 | cds-NP_011033.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:372648-373745:- | gene-YER107C_CBS6413 | rna-NM_001178998.3_CBS6413 | cds-NP_011033.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:371224-372321:- | gene-YER107C_CENPK1137D | rna-NM_001178998.3_CENPK1137D | cds-NP_011033.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:367177-368274:- | gene-YER107C_EthanolRed | rna-NM_001178998.3_EthanolRed | cds-NP_011033.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:367658-368755:- | gene-YER107C_FaliES1 | rna-NM_001178998.3_FaliES1 | cds-NP_011033.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000174.1:22785-23882:+ | gene-YER107C_JAY291 | rna-NM_001178998.3_JAY291 | cds-NP_011033.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:374759-375856:- | gene-YER107C_MUCL30387 | rna-NM_001178998.3_MUCL30387 | cds-NP_011033.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:369692-370789:- | gene-YER107C_MUCL30388 | rna-NM_001178998.3_MUCL30388 | cds-NP_011033.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:365756-366853:- | gene-YER107C_MUCL39482 | rna-NM_001178998.3_MUCL39482 | cds-NP_011033.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:374248-375345:- | gene-YER107C_MUCL42920 | rna-NM_001178998.3_MUCL42920 | cds-NP_011033.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:373447-374544:- | gene-YER107C_NCIM3186 | rna-NM_001178998.3_NCIM3186 | cds-NP_011033.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:371289-372386:- | gene-YER107C_NCYC1407 | rna-NM_001178998.3_NCYC1407 | cds-NP_011033.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:381829-382926:- | gene-YER107C_PE2H3 | rna-NM_001178998.3_PE2H3 | cds-NP_011033.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:371770-372867:- | gene-YER107C_PE2H4 | rna-NM_001178998.3_PE2H4 | cds-NP_011033.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:373448-374545:- | gene-YER107C_S288C | rna-NM_001178998.3_S288C | cds-NP_011033.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:83069-84166:- | gene-YER107C_SA1 | rna-NM_001178998.3_SA1 | cds-NP_011033.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:368455-369552:- | gene-YER107C_ThermosaccDry | rna-NM_001178998.3_ThermosaccDry | cds-NP_011033.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:369517-370614:- | gene-YER107C_VR1 | rna-NM_001178998.3_VR1 | cds-NP_011033.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:365580-366677:- | gene-YER107C_ZTW1 | rna-NM_001178998.3_ZTW1 | cds-NP_011033.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:369567-370664:- | gene-YER107C_Sparadoxus | rna-NM_001178998.3_Sparadoxus | cds-NP_011033.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |