Gene name: GLC3
Reference locus (S288C): YEL011W
Gene biotype: protein_coding
Description: Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; glycogen accumulation defect of the null mutant is functionally complemented by human GBE1, which is associated with glycogen storage disease; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily
Top 10 interactors (score): GSY1 (0.999); GDB1 (0.999); GPH1 (0.999); GLG1 (0.999); GSY2 (0.999); PGM2 (0.998); GLG2 (0.997); GIP2 (0.982); TPS1 (0.981); TSL1 (0.977); IGD1 (0.971); RGI1 (0.97); DCS2 (0.969); HXK1 (0.968); TPS2 (0.967); SGA1 (0.964); SOL4 (0.952); GAC1 (0.951); GLK1 (0.949); PGM1 (0.947)
Homologues (species, bitscore): GBE1 (Homo sapiens, 786.6); Gbe1 (Mus musculus, 794.7); LOC559212 (Danio rerio, 740.7); gbe1 (Xenopus tropicalis, 763.8); AGBE (Drosophila melanogaster, 754.2); T04A8.7 (Caenorhabditis elegans, 703.7); SBE2.1 (Arabidopsis thaliana, 708.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:127145-129259:+ | gene-YEL011W_AKU4011 | rna-NM_001178826.1_AKU4011 | cds-NP_010905.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:296716-298830:- | gene-YEL011W_BG1 | rna-NM_001178826.1_BG1 | cds-NP_010905.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:133666-135780:+ | gene-YEL011W_Bruggeman | rna-NM_001178826.1_Bruggeman | cds-NP_010905.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:129319-131433:+ | gene-YEL011W_CAT1 | rna-NM_001178826.1_CAT1 | cds-NP_010905.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:127457-129571:+ | gene-YEL011W_CBS1585 | rna-NM_001178826.1_CBS1585 | cds-NP_010905.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:128722-130836:+ | gene-YEL011W_CBS436 | rna-NM_001178826.1_CBS436 | cds-NP_010905.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:127364-129478:+ | gene-YEL011W_CBS6412 | rna-NM_001178826.1_CBS6412 | cds-NP_010905.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:131997-134111:+ | gene-YEL011W_CBS6413 | rna-NM_001178826.1_CBS6413 | cds-NP_010905.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:130973-133087:+ | gene-YEL011W_CENPK1137D | rna-NM_001178826.1_CENPK1137D | cds-NP_010905.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:127814-129928:+ | gene-YEL011W_EthanolRed | rna-NM_001178826.1_EthanolRed | cds-NP_010905.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:128073-130187:+ | gene-YEL011W_FaliES1 | rna-NM_001178826.1_FaliES1 | cds-NP_010905.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:46604-48718:+ | gene-YEL011W_JAY291 | rna-NM_001178826.1_JAY291 | cds-NP_010905.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:131390-133504:+ | gene-YEL011W_MUCL30387 | rna-NM_001178826.1_MUCL30387 | cds-NP_010905.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:127364-129478:+ | gene-YEL011W_MUCL30388 | rna-NM_001178826.1_MUCL30388 | cds-NP_010905.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:126488-128602:+ | gene-YEL011W_MUCL39482 | rna-NM_001178826.1_MUCL39482 | cds-NP_010905.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:131076-133190:+ | gene-YEL011W_MUCL42920 | rna-NM_001178826.1_MUCL42920 | cds-NP_010905.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:133119-135233:+ | gene-YEL011W_NCIM3186 | rna-NM_001178826.1_NCIM3186 | cds-NP_010905.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:131566-133680:+ | gene-YEL011W_NCYC1407 | rna-NM_001178826.1_NCYC1407 | cds-NP_010905.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:135571-137685:+ | gene-YEL011W_PE2H3 | rna-NM_001178826.1_PE2H3 | cds-NP_010905.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:131486-133600:+ | gene-YEL011W_PE2H4 | rna-NM_001178826.1_PE2H4 | cds-NP_010905.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:133120-135234:+ | gene-YEL011W_S288C | rna-NM_001178826.1_S288C | cds-NP_010905.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:107999-110113:- | gene-YEL011W_SA1 | rna-NM_001178826.1_SA1 | cds-NP_010905.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:128478-130592:+ | gene-YEL011W_ThermosaccDry | rna-NM_001178826.1_ThermosaccDry | cds-NP_010905.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:127662-129776:+ | gene-YEL011W_VR1 | rna-NM_001178826.1_VR1 | cds-NP_010905.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:126496-128610:+ | gene-YEL011W_ZTW1 | rna-NM_001178826.1_ZTW1 | cds-NP_010905.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:130068-132182:+ | gene-YEL011W_Sparadoxus | rna-NM_001178826.1_Sparadoxus | cds-NP_010905.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |