Gene name: GIS2
Reference locus (S288C): YNL255C
Gene biotype: protein_coding
Description: Zinc finger protein GIS2; Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2
Top 10 interactors (score): BRE5 (0.866); SRO9 (0.854); MRT4 (0.849); PAB1 (0.848); RPL10 (0.834); BRX1 (0.82); YFL068W (0.817); RTC4 (0.8); SBP1 (0.792); GIS4 (0.773); NOP1 (0.759); RPL15A (0.758); FOL1 (0.754); NOP4 (0.753); DBP2 (0.749); YDR521W (0.745); YKL102C (0.745); RPS1A (0.743); KRR1 (0.738); RPL13A (0.721)
Homologues (species, bitscore): CNBP (Homo sapiens, 99.8); Cnbp (Mus musculus, 100.9); cnbpa (Danio rerio, 98.2); cnbp (Xenopus tropicalis, 101.3); CG3800 (Drosophila melanogaster, 77.0); K08D12.3 (Caenorhabditis elegans, 82.8); CSDP1 (Arabidopsis thaliana, 93.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:161099-161560:- | gene-YNL255C_AKU4011 | rna-NM_001183093.1_AKU4011 | cds-NP_014144.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:65057-65518:- | gene-YNL255C_BG1 | rna-NM_001183093.1_BG1 | cds-NP_014144.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:170922-171383:- | gene-YNL255C_Bruggeman | rna-NM_001183093.1_Bruggeman | cds-NP_014144.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:178217-178678:- | gene-YNL255C_CAT1 | rna-NM_001183093.1_CAT1 | cds-NP_014144.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:161499-161960:- | gene-YNL255C_CBS1585 | rna-NM_001183093.1_CBS1585 | cds-NP_014144.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:156601-157062:- | gene-YNL255C_CBS436 | rna-NM_001183093.1_CBS436 | cds-NP_014144.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:157910-158371:- | gene-YNL255C_CBS6412 | rna-NM_001183093.1_CBS6412 | cds-NP_014144.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:158192-158653:- | gene-YNL255C_CBS6413 | rna-NM_001183093.1_CBS6413 | cds-NP_014144.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:161143-161604:- | gene-YNL255C_CENPK1137D | rna-NM_001183093.1_CENPK1137D | cds-NP_014144.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:158750-159211:- | gene-YNL255C_EthanolRed | rna-NM_001183093.1_EthanolRed | cds-NP_014144.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:153485-153946:- | gene-YNL255C_FaliES1 | rna-NM_001183093.1_FaliES1 | cds-NP_014144.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:64653-65114:- | gene-YNL255C_JAY291 | rna-NM_001183093.1_JAY291 | cds-NP_014144.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:166706-167167:- | gene-YNL255C_MUCL30387 | rna-NM_001183093.1_MUCL30387 | cds-NP_014144.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:165291-165752:- | gene-YNL255C_MUCL30388 | rna-NM_001183093.1_MUCL30388 | cds-NP_014144.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:158989-159450:- | gene-YNL255C_MUCL39482 | rna-NM_001183093.1_MUCL39482 | cds-NP_014144.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:161257-161718:- | gene-YNL255C_MUCL42920 | rna-NM_001183093.1_MUCL42920 | cds-NP_014144.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:167298-167759:- | gene-YNL255C_NCIM3186 | rna-NM_001183093.1_NCIM3186 | cds-NP_014144.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:161094-161555:- | gene-YNL255C_NCYC1407 | rna-NM_001183093.1_NCYC1407 | cds-NP_014144.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:157995-158456:- | gene-YNL255C_PE2H3 | rna-NM_001183093.1_PE2H3 | cds-NP_014144.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:157383-157844:- | gene-YNL255C_PE2H4 | rna-NM_001183093.1_PE2H4 | cds-NP_014144.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:167329-167790:- | gene-YNL255C_S288C | rna-NM_001183093.1_S288C | cds-NP_014144.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:84500-84961:+ | gene-YNL255C_SA1 | rna-NM_001183093.1_SA1 | cds-NP_014144.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:154341-154802:- | gene-YNL255C_ThermosaccDry | rna-NM_001183093.1_ThermosaccDry | cds-NP_014144.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:173252-173713:- | gene-YNL255C_VR1 | rna-NM_001183093.1_VR1 | cds-NP_014144.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:64673-65134:- | gene-YNL255C_ZTW1 | rna-NM_001183093.1_ZTW1 | cds-NP_014144.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:164571-165032:- | gene-YNL255C_Sparadoxus | rna-NM_001183093.1_Sparadoxus | cds-NP_014144.1_Sparadoxus | 95.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |