Gene name: GIP2
Reference locus (S288C): YER054C
Gene biotype: protein_coding
Description: GLC7-interacting protein 2; Putative regulatory subunit of protein phosphatase Glc7p; involved in glycogen metabolism; contains a conserved motif (GVNK motif) that is also found in Gac1p, Pig1p, and Pig2p; GIP2 has a paralog, PIG2, that arose from the whole genome duplication
Top 10 interactors (score): GLC7 (0.996); PIG1 (0.99); GSY2 (0.986); GLC3 (0.982); GAC1 (0.982); GIP1 (0.959); PPZ1 (0.938); SDS22 (0.938); PIG2 (0.934); GDB1 (0.923); SOL4 (0.903); GSY1 (0.901); UIP4 (0.898); REG2 (0.891); PGM2 (0.889); PPZ2 (0.879); YPI1 (0.876); GPH1 (0.87); USV1 (0.85); DCS2 (0.848)
Homologues (species, bitscore): PPP1R3C (Homo sapiens, 77.0); Ppp1r3c (Mus musculus, 72.8); zgc:77112 (Danio rerio, 79.7); ppp1r3c.1 (Xenopus tropicalis, 74.7); Gbs-70E (Drosophila melanogaster, 72.8); CC8.2 (Caenorhabditis elegans, 72.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:255849-257495:- | gene-YER054C_AKU4011 | rna-NM_001178945.1_AKU4011 | cds-NP_010974.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:168282-169928:+ | gene-YER054C_BG1 | rna-NM_001178945.1_BG1 | cds-NP_010974.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:264641-266287:- | gene-YER054C_Bruggeman | rna-NM_001178945.1_Bruggeman | cds-NP_010974.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:258798-260444:- | gene-YER054C_CAT1 | rna-NM_001178945.1_CAT1 | cds-NP_010974.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:255705-257351:- | gene-YER054C_CBS1585 | rna-NM_001178945.1_CBS1585 | cds-NP_010974.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:257614-259260:- | gene-YER054C_CBS436 | rna-NM_001178945.1_CBS436 | cds-NP_010974.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:255174-256820:- | gene-YER054C_CBS6412 | rna-NM_001178945.1_CBS6412 | cds-NP_010974.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:261182-262828:- | gene-YER054C_CBS6413 | rna-NM_001178945.1_CBS6413 | cds-NP_010974.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:259916-261562:- | gene-YER054C_CENPK1137D | rna-NM_001178945.1_CENPK1137D | cds-NP_010974.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:256188-257834:- | gene-YER054C_EthanolRed | rna-NM_001178945.1_EthanolRed | cds-NP_010974.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:256642-258288:- | gene-YER054C_FaliES1 | rna-NM_001178945.1_FaliES1 | cds-NP_010974.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000406.1:3002-4648:+ | gene-YER054C_JAY291 | rna-NM_001178945.1_JAY291 | cds-NP_010974.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:260087-261733:- | gene-YER054C_MUCL30387 | rna-NM_001178945.1_MUCL30387 | cds-NP_010974.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:256276-257922:- | gene-YER054C_MUCL30388 | rna-NM_001178945.1_MUCL30388 | cds-NP_010974.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:254739-256385:- | gene-YER054C_MUCL39482 | rna-NM_001178945.1_MUCL39482 | cds-NP_010974.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:261795-263444:- | gene-YER054C_MUCL42920 | rna-NM_001178945.1_MUCL42920 | cds-NP_010974.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:262051-263697:- | gene-YER054C_NCIM3186 | rna-NM_001178945.1_NCIM3186 | cds-NP_010974.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:259803-261449:- | gene-YER054C_NCYC1407 | rna-NM_001178945.1_NCYC1407 | cds-NP_010974.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:270449-272095:- | gene-YER054C_PE2H3 | rna-NM_001178945.1_PE2H3 | cds-NP_010974.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:260390-262036:- | gene-YER054C_PE2H4 | rna-NM_001178945.1_PE2H4 | cds-NP_010974.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:262052-263698:- | gene-YER054C_S288C | rna-NM_001178945.1_S288C | cds-NP_010974.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:48575-50221:- | gene-YER054C_SA1 | rna-NM_001178945.1_SA1 | cds-NP_010974.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:257439-259085:- | gene-YER054C_ThermosaccDry | rna-NM_001178945.1_ThermosaccDry | cds-NP_010974.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:256512-258158:- | gene-YER054C_VR1 | rna-NM_001178945.1_VR1 | cds-NP_010974.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:254627-256273:- | gene-YER054C_ZTW1 | rna-NM_001178945.1_ZTW1 | cds-NP_010974.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:258486-260129:- | gene-YER054C_Sparadoxus | rna-NM_001178945.1_Sparadoxus | cds-NP_010974.1_Sparadoxus | 89.4 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |