Gene name: GIM4
Reference locus (S288C): YEL003W
Gene biotype: protein_coding
Description: Prefoldin subunit 2; Subunit of the heterohexameric cochaperone prefoldin complex; complex binds specifically to cytosolic chaperonin and transfers target proteins to it
Top 10 interactors (score): PAC10 (0.999); GIM5 (0.999); GIM3 (0.999); YKE2 (0.999); RPB5 (0.997); PFD1 (0.99); RVB1 (0.982); TIM13 (0.882); TCP1 (0.865); BUD27 (0.852); CIN1 (0.845); CCT2 (0.841); CCT8 (0.817); CCT3 (0.767); PLP1 (0.749); YGL199C (0.744); CIN2 (0.742); TUB3 (0.739); CCT4 (0.736); CCT5 (0.732)
Homologues (species, bitscore): PFDN2 (Homo sapiens, 75.5); Pfdn2 (Mus musculus, 75.9); pfdn2 (Danio rerio, 66.6); pfdn2 (Xenopus tropicalis, 72.4); l(3)01239 (Drosophila melanogaster, 63.2); At3g22480 (Arabidopsis thaliana, 65.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:141857-142280:+ | gene-YEL003W_AKU4011 | rna-NM_001178818.1_AKU4011 | cds-NP_010913.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:283390-283813:- | gene-YEL003W_BG1 | rna-NM_001178818.1_BG1 | cds-NP_010913.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:148389-148812:+ | gene-YEL003W_Bruggeman | rna-NM_001178818.1_Bruggeman | cds-NP_010913.2_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:144787-145210:+ | gene-YEL003W_CAT1 | rna-NM_001178818.1_CAT1 | cds-NP_010913.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:142166-142589:+ | gene-YEL003W_CBS1585 | rna-NM_001178818.1_CBS1585 | cds-NP_010913.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:143445-143868:+ | gene-YEL003W_CBS436 | rna-NM_001178818.1_CBS436 | cds-NP_010913.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:142060-142483:+ | gene-YEL003W_CBS6412 | rna-NM_001178818.1_CBS6412 | cds-NP_010913.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:146708-147131:+ | gene-YEL003W_CBS6413 | rna-NM_001178818.1_CBS6413 | cds-NP_010913.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:146003-146426:+ | gene-YEL003W_CENPK1137D | rna-NM_001178818.1_CENPK1137D | cds-NP_010913.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:142522-142945:+ | gene-YEL003W_EthanolRed | rna-NM_001178818.1_EthanolRed | cds-NP_010913.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:142781-143204:+ | gene-YEL003W_FaliES1 | rna-NM_001178818.1_FaliES1 | cds-NP_010913.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:9762-10185:+ | gene-YEL003W_JAY291 | rna-NM_001178818.1_JAY291 | cds-NP_010913.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:146091-146514:+ | gene-YEL003W_MUCL30387 | rna-NM_001178818.1_MUCL30387 | cds-NP_010913.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:142612-143035:+ | gene-YEL003W_MUCL30388 | rna-NM_001178818.1_MUCL30388 | cds-NP_010913.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:141202-141625:+ | gene-YEL003W_MUCL39482 | rna-NM_001178818.1_MUCL39482 | cds-NP_010913.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:145798-146221:+ | gene-YEL003W_MUCL42920 | rna-NM_001178818.1_MUCL42920 | cds-NP_010913.2_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:148175-148598:+ | gene-YEL003W_NCIM3186 | rna-NM_001178818.1_NCIM3186 | cds-NP_010913.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:146278-146701:+ | gene-YEL003W_NCYC1407 | rna-NM_001178818.1_NCYC1407 | cds-NP_010913.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:150589-151012:+ | gene-YEL003W_PE2H3 | rna-NM_001178818.1_PE2H3 | cds-NP_010913.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:146504-146927:+ | gene-YEL003W_PE2H4 | rna-NM_001178818.1_PE2H4 | cds-NP_010913.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:148176-148599:+ | gene-YEL003W_S288C | rna-NM_001178818.1_S288C | cds-NP_010913.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:94992-95415:- | gene-YEL003W_SA1 | rna-NM_001178818.1_SA1 | cds-NP_010913.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:143187-143610:+ | gene-YEL003W_ThermosaccDry | rna-NM_001178818.1_ThermosaccDry | cds-NP_010913.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:142680-143103:+ | gene-YEL003W_VR1 | rna-NM_001178818.1_VR1 | cds-NP_010913.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:141215-141638:+ | gene-YEL003W_ZTW1 | rna-NM_001178818.1_ZTW1 | cds-NP_010913.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:145881-146315:+ | gene-YEL003W_Sparadoxus | rna-NM_001178818.1_Sparadoxus | cds-NP_010913.2_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |