Gene name: GIM3
Reference locus (S288C): YNL153C
Gene biotype: protein_coding
Description: Prefoldin subunit 4; Subunit of the heterohexameric cochaperone prefoldin complex; prefoldin binds specifically to cytosolic chaperonin and transfers target proteins to it; prefoldin complex also localizes to chromatin of actively transcribed genes in the nucleus and facilitates transcriptional elongation
Top 10 interactors (score): GIM5 (0.999); PAC10 (0.999); YKE2 (0.999); GIM4 (0.999); PFD1 (0.989); TCP1 (0.929); PUP3 (0.899); CIN1 (0.878); PRE9 (0.844); VPS71 (0.822); CIN2 (0.811); TUB3 (0.809); HTZ1 (0.789); RPB5 (0.788); VPS72 (0.763); CCT8 (0.757); MCM16 (0.745); CCT2 (0.742); VMA10 (0.741); SWR1 (0.734)
Homologues (species, bitscore): PFDN4 (Homo sapiens, 74.3); Pfdn4 (Mus musculus, 73.6); pfdn4 (Danio rerio, 75.1); pfdn4 (Xenopus tropicalis, 75.1); CG10635 (Drosophila melanogaster, 80.5); AIP3 (Arabidopsis thaliana, 72.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:339384-339773:- | gene-YNL153C_AKU4011 | rna-NM_001182991.1_AKU4011 | cds-NP_014246.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:243410-243799:- | gene-YNL153C_BG1 | rna-NM_001182991.1_BG1 | cds-NP_014246.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:349450-349839:- | gene-YNL153C_Bruggeman | rna-NM_001182991.1_Bruggeman | cds-NP_014246.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:392374-392763:- | gene-YNL153C_CAT1 | rna-NM_001182991.1_CAT1 | cds-NP_014246.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:340034-340423:- | gene-YNL153C_CBS1585 | rna-NM_001182991.1_CBS1585 | cds-NP_014246.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:408390-408779:- | gene-YNL153C_CBS436 | rna-NM_001182991.1_CBS436 | cds-NP_014246.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:335440-335829:- | gene-YNL153C_CBS6412 | rna-NM_001182991.1_CBS6412 | cds-NP_014246.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:336468-336857:- | gene-YNL153C_CBS6413 | rna-NM_001182991.1_CBS6413 | cds-NP_014246.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:339515-339904:- | gene-YNL153C_CENPK1137D | rna-NM_001182991.1_CENPK1137D | cds-NP_014246.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:336369-336758:- | gene-YNL153C_EthanolRed | rna-NM_001182991.1_EthanolRed | cds-NP_014246.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:332282-332671:- | gene-YNL153C_FaliES1 | rna-NM_001182991.1_FaliES1 | cds-NP_014246.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000439.1:10982-11371:+ | gene-YNL153C_JAY291 | rna-NM_001182991.1_JAY291 | cds-NP_014246.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:345270-345659:- | gene-YNL153C_MUCL30387 | rna-NM_001182991.1_MUCL30387 | cds-NP_014246.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:379822-380211:- | gene-YNL153C_MUCL30388 | rna-NM_001182991.1_MUCL30388 | cds-NP_014246.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:337274-337663:- | gene-YNL153C_MUCL39482 | rna-NM_001182991.1_MUCL39482 | cds-NP_014246.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:339674-340063:- | gene-YNL153C_MUCL42920 | rna-NM_001182991.1_MUCL42920 | cds-NP_014246.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:345638-346027:- | gene-YNL153C_NCIM3186 | rna-NM_001182991.1_NCIM3186 | cds-NP_014246.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:339368-339757:- | gene-YNL153C_NCYC1407 | rna-NM_001182991.1_NCYC1407 | cds-NP_014246.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:336362-336751:- | gene-YNL153C_PE2H3 | rna-NM_001182991.1_PE2H3 | cds-NP_014246.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:335750-336139:- | gene-YNL153C_PE2H4 | rna-NM_001182991.1_PE2H4 | cds-NP_014246.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:345669-346058:- | gene-YNL153C_S288C | rna-NM_001182991.1_S288C | cds-NP_014246.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:67491-67880:+ | gene-YNL153C_SA1 | rna-NM_001182991.1_SA1 | cds-NP_014246.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:333139-333528:- | gene-YNL153C_ThermosaccDry | rna-NM_001182991.1_ThermosaccDry | cds-NP_014246.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:351690-352079:- | gene-YNL153C_VR1 | rna-NM_001182991.1_VR1 | cds-NP_014246.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:242958-243347:- | gene-YNL153C_ZTW1 | rna-NM_001182991.1_ZTW1 | cds-NP_014246.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:343829-344218:- | gene-YNL153C_Sparadoxus | rna-NM_001182991.1_Sparadoxus | cds-NP_014246.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |