Gene name: GGA2
Reference locus (S288C): YHR108W
Gene biotype: protein_coding
Description: ADP-ribosylation factor-binding protein GGA2; Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking; binds phosphatidylinositol 4-phosphate, which plays a role in TGN localization; has homology to gamma-adaptin; GGA2 has a paralog, GGA1, that arose from the whole genome duplication
Top 10 interactors (score): ENT3 (0.985); ENT5 (0.977); ARF1 (0.971); MRL1 (0.966); CHC1 (0.963); APL4 (0.959); GGA1 (0.948); CLC1 (0.94); ARF2 (0.938); ARF3 (0.916); VPS27 (0.898); UBI4 (0.888); PEP1 (0.857); PEP12 (0.818); INP53 (0.806); SEC7 (0.804); PIK1 (0.803); APL2 (0.799); KEX2 (0.791); ARN1 (0.787)
Homologues (species, bitscore): GGA3 (Homo sapiens, 89.0); Gga1 (Mus musculus, 92.8); gga3 (Danio rerio, 96.3); tom1l2 (Xenopus tropicalis, 82.8); CG3529 (Drosophila melanogaster, 92.0); C07A12.7 (Caenorhabditis elegans, 72.4); AT4G32760 (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:315223-316980:+ | gene-YHR108W_AKU4011 | rna-NM_001179238.1_AKU4011 | cds-NP_011976.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:200929-202686:- | gene-YHR108W_BG1 | rna-NM_001179238.1_BG1 | cds-NP_011976.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:322517-324274:+ | gene-YHR108W_Bruggeman | rna-NM_001179238.1_Bruggeman | cds-NP_011976.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:317658-319415:+ | gene-YHR108W_CAT1 | rna-NM_001179238.1_CAT1 | cds-NP_011976.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:314246-316003:+ | gene-YHR108W_CBS1585 | rna-NM_001179238.1_CBS1585 | cds-NP_011976.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:311601-313358:+ | gene-YHR108W_CBS436 | rna-NM_001179238.1_CBS436 | cds-NP_011976.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:316056-317813:+ | gene-YHR108W_CBS6412 | rna-NM_001179238.1_CBS6412 | cds-NP_011976.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:315274-317031:+ | gene-YHR108W_CBS6413 | rna-NM_001179238.1_CBS6413 | cds-NP_011976.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:321474-323231:+ | gene-YHR108W_CENPK1137D | rna-NM_001179238.1_CENPK1137D | cds-NP_011976.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:374131-375888:+ | gene-YHR108W_EthanolRed | rna-NM_001179238.1_EthanolRed | cds-NP_011976.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:315619-317376:+ | gene-YHR108W_FaliES1 | rna-NM_001179238.1_FaliES1 | cds-NP_011976.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000045.1:36198-37955:+ | gene-YHR108W_JAY291 | rna-NM_001179238.1_JAY291 | cds-NP_011976.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:322241-323998:+ | gene-YHR108W_MUCL30387 | rna-NM_001179238.1_MUCL30387 | cds-NP_011976.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:321895-323652:+ | gene-YHR108W_MUCL30388 | rna-NM_001179238.1_MUCL30388 | cds-NP_011976.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:314587-316344:+ | gene-YHR108W_MUCL39482 | rna-NM_001179238.1_MUCL39482 | cds-NP_011976.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:320833-322590:+ | gene-YHR108W_MUCL42920 | rna-NM_001179238.1_MUCL42920 | cds-NP_011976.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:328185-329942:+ | gene-YHR108W_NCIM3186 | rna-NM_001179238.1_NCIM3186 | cds-NP_011976.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:316796-318553:+ | gene-YHR108W_NCYC1407 | rna-NM_001179238.1_NCYC1407 | cds-NP_011976.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:316234-317991:+ | gene-YHR108W_PE2H3 | rna-NM_001179238.1_PE2H3 | cds-NP_011976.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:323661-325418:+ | gene-YHR108W_PE2H4 | rna-NM_001179238.1_PE2H4 | cds-NP_011976.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:328303-330060:+ | gene-YHR108W_S288C | rna-NM_001179238.1_S288C | cds-NP_011976.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:28916-30673:- | gene-YHR108W_SA1 | rna-NM_001179238.1_SA1 | cds-NP_011976.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:316702-318459:+ | gene-YHR108W_ThermosaccDry | rna-NM_001179238.1_ThermosaccDry | cds-NP_011976.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:324322-326079:+ | gene-YHR108W_VR1 | rna-NM_001179238.1_VR1 | cds-NP_011976.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:307738-309495:+ | gene-YHR108W_ZTW1 | rna-NM_001179238.1_ZTW1 | cds-NP_011976.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:313383-315140:+ | gene-YHR108W_Sparadoxus | rna-NM_001179238.1_Sparadoxus | cds-NP_011976.1_Sparadoxus | 90.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |