Gene name: GGA1
Reference locus (S288C): YDR358W
Gene biotype: protein_coding
Description: ADP-ribosylation factor-binding protein GGA1; Golgi-localized protein with homology to gamma-adaptin; interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi; GGA1 has a paralog, GGA2, that arose from the whole genome duplication
Top 10 interactors (score): MRL1 (0.966); ARF1 (0.965); GGA2 (0.948); ARF2 (0.92); VPS27 (0.92); YLR345W (0.919); ARF3 (0.918); APL4 (0.915); ENT5 (0.912); SLH1 (0.903); ENT3 (0.891); HSP42 (0.885); CHC1 (0.857); GLC3 (0.836); HSP78 (0.834); RSP5 (0.826); HSP104 (0.82); STP22 (0.813); DCS1 (0.811); PEP1 (0.802)
Homologues (species, bitscore): GGA3 (Homo sapiens, 83.6); Gga3 (Mus musculus, 79.3); gga3b (Danio rerio, 88.2); gga3 (Xenopus tropicalis, 82.0); CG3529 (Drosophila melanogaster, 70.9); C07A12.7 (Caenorhabditis elegans, 70.1); AT4G32760 (Arabidopsis thaliana, 75.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1136121-1137794:+ | gene-YDR358W_AKU4011 | rna-NM_001180666.1_AKU4011 | cds-NP_010645.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:14672-16345:+ | gene-YDR358W_BG1 | rna-NM_001180666.1_BG1 | cds-NP_010645.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1166776-1168449:+ | gene-YDR358W_Bruggeman | rna-NM_001180666.1_Bruggeman | cds-NP_010645.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1145366-1147039:+ | gene-YDR358W_CAT1 | rna-NM_001180666.1_CAT1 | cds-NP_010645.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1130838-1132511:+ | gene-YDR358W_CBS1585 | rna-NM_001180666.1_CBS1585 | cds-NP_010645.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1149422-1151095:+ | gene-YDR358W_CBS436 | rna-NM_001180666.1_CBS436 | cds-NP_010645.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1127098-1128771:+ | gene-YDR358W_CBS6412 | rna-NM_001180666.1_CBS6412 | cds-NP_010645.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1148988-1150661:+ | gene-YDR358W_CBS6413 | rna-NM_001180666.1_CBS6413 | cds-NP_010645.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1188705-1190378:+ | gene-YDR358W_CENPK1137D | rna-NM_001180666.1_CENPK1137D | cds-NP_010645.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1140523-1142196:+ | gene-YDR358W_EthanolRed | rna-NM_001180666.1_EthanolRed | cds-NP_010645.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1143806-1145479:+ | gene-YDR358W_FaliES1 | rna-NM_001180666.1_FaliES1 | cds-NP_010645.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:45591-47264:- | gene-YDR358W_JAY291 | rna-NM_001180666.1_JAY291 | cds-NP_010645.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1150074-1151747:+ | gene-YDR358W_MUCL30387 | rna-NM_001180666.1_MUCL30387 | cds-NP_010645.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1132678-1134351:+ | gene-YDR358W_MUCL30388 | rna-NM_001180666.1_MUCL30388 | cds-NP_010645.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1122372-1124045:+ | gene-YDR358W_MUCL39482 | rna-NM_001180666.1_MUCL39482 | cds-NP_010645.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1064308-1065981:+ | gene-YDR358W_MUCL42920 | rna-NM_001180666.1_MUCL42920 | cds-NP_010645.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1189982-1191655:+ | gene-YDR358W_NCIM3186 | rna-NM_001180666.1_NCIM3186 | cds-NP_010645.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1136045-1137718:+ | gene-YDR358W_NCYC1407 | rna-NM_001180666.1_NCYC1407 | cds-NP_010645.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1146475-1148148:+ | gene-YDR358W_PE2H3 | rna-NM_001180666.1_PE2H3 | cds-NP_010645.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1152060-1153733:+ | gene-YDR358W_PE2H4 | rna-NM_001180666.1_PE2H4 | cds-NP_010645.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1190059-1191732:+ | gene-YDR358W_S288C | rna-NM_001180666.1_S288C | cds-NP_010645.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:14753-16426:+ | gene-YDR358W_SA1 | rna-NM_001180666.1_SA1 | cds-NP_010645.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1148087-1149760:+ | gene-YDR358W_ThermosaccDry | rna-NM_001180666.1_ThermosaccDry | cds-NP_010645.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:575439-577112:+ | gene-YDR358W_VR1 | rna-NM_001180666.1_VR1 | cds-NP_010645.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:190922-192595:+ | gene-YDR358W_ZTW1 | rna-NM_001180666.1_ZTW1 | cds-NP_010645.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1142019-1143692:+ | gene-YDR358W_Sparadoxus | rna-NM_001180666.1_Sparadoxus | cds-NP_010645.1_Sparadoxus | 87.0 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |