Gene name: GFD2
Reference locus (S288C): YCL036W
Gene biotype: protein_coding
Description: Good for full DBP5 activity protein 2; Protein of unknown function; identified as a high-copy suppressor of a dbp5 mutation; GFD2 has a paralog, YDR514C, that arose from the whole genome duplication
Top 10 interactors (score): RSA4 (0.8); YPL278C (0.781); NOG2 (0.734); AAH1 (0.673); SPS4 (0.655); GEX1 (0.613); PHO12 (0.611); DBP8 (0.589); HMRA1 (0.575); RPL18B (0.561); UTP15 (0.56); RPL18A (0.528); YDL247W-A (0.526); YOR381W-A (0.526); YMR320W (0.526); YAL056C-A (0.525); YAL059C-A (0.525); YHR214C-E (0.522); YHR214C-D (0.522); HMS1 (0.499)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:60388-62088:+ | gene-YCL036W_AKU4011 | rna-NM_001178681.1_AKU4011 | cds-NP_009894.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:85026-86726:- | gene-YCL036W_BG1 | rna-NM_001178681.1_BG1 | cds-NP_009894.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:48579-50279:+ | gene-YCL036W_Bruggeman | rna-NM_001178681.1_Bruggeman | cds-NP_009894.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:60183-61883:+ | gene-YCL036W_CAT1 | rna-NM_001178681.1_CAT1 | cds-NP_009894.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:61075-62775:+ | gene-YCL036W_CBS1585 | rna-NM_001178681.1_CBS1585 | cds-NP_009894.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:59522-61222:+ | gene-YCL036W_CBS436 | rna-NM_001178681.1_CBS436 | cds-NP_009894.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:48477-50177:+ | gene-YCL036W_CBS6412 | rna-NM_001178681.1_CBS6412 | cds-NP_009894.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:59849-61549:+ | gene-YCL036W_CBS6413 | rna-NM_001178681.1_CBS6413 | cds-NP_009894.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:58605-60323:+ | gene-YCL036W_CENPK1137D | rna-NM_001178681.1_CENPK1137D | cds-NP_009894.1_CENPK1137D | 97.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:58410-60110:+ | gene-YCL036W_EthanolRed | rna-NM_001178681.1_EthanolRed | cds-NP_009894.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:59350-61050:+ | gene-YCL036W_FaliES1 | rna-NM_001178681.1_FaliES1 | cds-NP_009894.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:23332-25032:- | gene-YCL036W_JAY291 | rna-NM_001178681.1_JAY291 | cds-NP_009894.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:46775-48475:+ | gene-YCL036W_MUCL30387 | rna-NM_001178681.1_MUCL30387 | cds-NP_009894.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:47048-48748:+ | gene-YCL036W_MUCL30388 | rna-NM_001178681.1_MUCL30388 | cds-NP_009894.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:61444-63144:+ | gene-YCL036W_MUCL39482 | rna-NM_001178681.1_MUCL39482 | cds-NP_009894.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:47560-49260:+ | gene-YCL036W_MUCL42920 | rna-NM_001178681.1_MUCL42920 | cds-NP_009894.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:58658-60358:+ | gene-YCL036W_NCIM3186 | rna-NM_001178681.1_NCIM3186 | cds-NP_009894.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:61932-63632:+ | gene-YCL036W_NCYC1407 | rna-NM_001178681.1_NCYC1407 | cds-NP_009894.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:59479-61179:+ | gene-YCL036W_PE2H3 | rna-NM_001178681.1_PE2H3 | cds-NP_009894.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:59436-61136:+ | gene-YCL036W_PE2H4 | rna-NM_001178681.1_PE2H4 | cds-NP_009894.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:59026-60726:+ | gene-YCL036W_S288C | rna-NM_001178681.1_S288C | cds-NP_009894.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:46163-47863:+ | gene-YCL036W_SA1 | rna-NM_001178681.1_SA1 | cds-NP_009894.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:59671-61371:+ | gene-YCL036W_ThermosaccDry | rna-NM_001178681.1_ThermosaccDry | cds-NP_009894.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:65968-67668:+ | gene-YCL036W_VR1 | rna-NM_001178681.1_VR1 | cds-NP_009894.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:59871-61571:+ | gene-YCL036W_ZTW1 | rna-NM_001178681.1_ZTW1 | cds-NP_009894.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:89398-91098:+ | gene-YCL036W_Sparadoxus | rna-NM_001178681.1_Sparadoxus | cds-NP_009894.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |