Gene name: GFD1
Reference locus (S288C): YMR255W
Gene biotype: protein_coding
Description: mRNA transport factor GFD1; Coiled-coiled protein of unknown function; identified as a high-copy suppressor of a dbp5 mutation; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): NAB2 (0.999); GLE1 (0.987); DBP5 (0.966); NUP42 (0.937); MLP1 (0.813); MEX67 (0.75); DHR2 (0.698); KAP104 (0.619); NUP159 (0.615); MTR2 (0.574); PET111 (0.573); YRA1 (0.571); ZNF1 (0.567); ZDS1 (0.564); NTF2 (0.499); SUS1 (0.489); GLE2 (0.487); COX7 (0.452); PCF11 (0.45); GSP1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:817438-818004:+ | gene-YMR255W_AKU4011 | rna-NM_001182762.1_AKU4011 | cds-NP_013982.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:136399-136965:- | gene-YMR255W_BG1 | rna-NM_001182762.1_BG1 | cds-NP_013982.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:762666-763232:+ | gene-YMR255W_Bruggeman | rna-NM_001182762.1_Bruggeman | cds-NP_013982.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:765689-766255:+ | gene-YMR255W_CAT1 | rna-NM_001182762.1_CAT1 | cds-NP_013982.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:749687-750253:+ | gene-YMR255W_CBS1585 | rna-NM_001182762.1_CBS1585 | cds-NP_013982.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:754712-755278:+ | gene-YMR255W_CBS436 | rna-NM_001182762.1_CBS436 | cds-NP_013982.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:861251-861817:+ | gene-YMR255W_CBS6412 | rna-NM_001182762.1_CBS6412 | cds-NP_013982.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:748798-749364:+ | gene-YMR255W_CBS6413 | rna-NM_001182762.1_CBS6413 | cds-NP_013982.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:772366-772932:+ | gene-YMR255W_CENPK1137D | rna-NM_001182762.1_CENPK1137D | cds-NP_013982.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:810139-810705:+ | gene-YMR255W_EthanolRed | rna-NM_001182762.1_EthanolRed | cds-NP_013982.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:756166-756732:+ | gene-YMR255W_FaliES1 | rna-NM_001182762.1_FaliES1 | cds-NP_013982.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:29795-30361:- | gene-YMR255W_JAY291 | rna-NM_001182762.1_JAY291 | cds-NP_013982.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:756514-757080:+ | gene-YMR255W_MUCL30387 | rna-NM_001182762.1_MUCL30387 | cds-NP_013982.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:765107-765673:+ | gene-YMR255W_MUCL30388 | rna-NM_001182762.1_MUCL30388 | cds-NP_013982.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:750775-751341:+ | gene-YMR255W_MUCL39482 | rna-NM_001182762.1_MUCL39482 | cds-NP_013982.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:758843-759409:+ | gene-YMR255W_MUCL42920 | rna-NM_001182762.1_MUCL42920 | cds-NP_013982.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:777955-778521:+ | gene-YMR255W_NCIM3186 | rna-NM_001182762.1_NCIM3186 | cds-NP_013982.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:750408-750974:+ | gene-YMR255W_NCYC1407 | rna-NM_001182762.1_NCYC1407 | cds-NP_013982.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:760409-760975:+ | gene-YMR255W_PE2H3 | rna-NM_001182762.1_PE2H3 | cds-NP_013982.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:761454-762020:+ | gene-YMR255W_PE2H4 | rna-NM_001182762.1_PE2H4 | cds-NP_013982.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:778001-778567:+ | gene-YMR255W_S288C | rna-NM_001182762.1_S288C | cds-NP_013982.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:29871-30437:- | gene-YMR255W_SA1 | rna-NM_001182762.1_SA1 | cds-NP_013982.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:752335-752901:+ | gene-YMR255W_ThermosaccDry | rna-NM_001182762.1_ThermosaccDry | cds-NP_013982.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:764942-765508:+ | gene-YMR255W_VR1 | rna-NM_001182762.1_VR1 | cds-NP_013982.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:167532-168098:+ | gene-YMR255W_ZTW1 | rna-NM_001182762.1_ZTW1 | cds-NP_013982.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:770713-771279:+ | gene-YMR255W_Sparadoxus | rna-NM_001182762.1_Sparadoxus | cds-NP_013982.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |