Gene name: GDH3
Reference locus (S288C): YAL062W
Gene biotype: protein_coding
Description: NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; GDH3 has a paralog, GDH1, that arose from the whole genome duplication; Belongs to the Glu/Leu/Phe/Val dehydrogenases family
Top 10 interactors (score): GDH1 (0.999); GLT1 (0.999); GLN1 (0.996); GDH2 (0.992); PUT2 (0.977); AAT1 (0.977); ALT1 (0.969); AAT2 (0.969); GAD1 (0.967); GCV1 (0.949); ALT2 (0.934); NIT3 (0.927); KGD1 (0.926); ARG2 (0.923); ARG7 (0.918); NIT1 (0.918); CIT2 (0.918); PCK1 (0.917); CIT1 (0.914); LPD1 (0.912)
Homologues (species, bitscore): GLUD1 (Homo sapiens, 127.1); Glud1 (Mus musculus, 128.6); glud1a (Danio rerio, 120.9); glud1 (Xenopus tropicalis, 102.4); CG4434 (Drosophila melanogaster, 134.0); gdh-1 (Caenorhabditis elegans, 107.5); AT1G51720 (Arabidopsis thaliana, 328.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:16713-18086:+ | gene-YAL062W_AKU4011 | rna-NM_001178204.1_AKU4011 | cds-NP_009339.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:3799-5172:+ | gene-YAL062W_BG1 | rna-NM_001178204.1_BG1 | cds-NP_009339.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:30272-31645:+ | gene-YAL062W_Bruggeman | rna-NM_001178204.1_Bruggeman | cds-NP_009339.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:16638-18011:+ | gene-YAL062W_CAT1 | rna-NM_001178204.1_CAT1 | cds-NP_009339.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:29737-31110:+ | gene-YAL062W_CBS1585 | rna-NM_001178204.1_CBS1585 | cds-NP_009339.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:29977-31350:+ | gene-YAL062W_CBS436 | rna-NM_001178204.1_CBS436 | cds-NP_009339.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:15876-17249:+ | gene-YAL062W_CBS6412 | rna-NM_001178204.1_CBS6412 | cds-NP_009339.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:27997-29370:+ | gene-YAL062W_CBS6413 | rna-NM_001178204.1_CBS6413 | cds-NP_009339.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:31625-32998:+ | gene-YAL062W_CENPK1137D | rna-NM_001178204.1_CENPK1137D | cds-NP_009339.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:18130-19503:+ | gene-YAL062W_EthanolRed | rna-NM_001178204.1_EthanolRed | cds-NP_009339.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:32073-33446:+ | gene-YAL062W_FaliES1 | rna-NM_001178204.1_FaliES1 | cds-NP_009339.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:4021-5394:+ | gene-YAL062W_JAY291 | rna-NM_001178204.1_JAY291 | cds-NP_009339.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:32677-34051:+ | gene-YAL062W_MUCL30387 | rna-NM_001178204.1_MUCL30387 | cds-NP_009339.1_MUCL30387 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:29222-30595:+ | gene-YAL062W_MUCL30388 | rna-NM_001178204.1_MUCL30388 | cds-NP_009339.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:28539-29912:+ | gene-YAL062W_MUCL39482 | rna-NM_001178204.1_MUCL39482 | cds-NP_009339.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:30879-32252:+ | gene-YAL062W_MUCL42920 | rna-NM_001178204.1_MUCL42920 | cds-NP_009339.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:31444-32817:+ | gene-YAL062W_NCIM3186 | rna-NM_001178204.1_NCIM3186 | cds-NP_009339.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:16403-17776:+ | gene-YAL062W_NCYC1407 | rna-NM_001178204.1_NCYC1407 | cds-NP_009339.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:18280-19653:+ | gene-YAL062W_PE2H3 | rna-NM_001178204.1_PE2H3 | cds-NP_009339.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:18001-19374:+ | gene-YAL062W_PE2H4 | rna-NM_001178204.1_PE2H4 | cds-NP_009339.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:31567-32940:+ | gene-YAL062W_S288C | rna-NM_001178204.1_S288C | cds-NP_009339.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:6178-7551:+ | gene-YAL062W_SA1 | rna-NM_001178204.1_SA1 | cds-NP_009339.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:32282-33655:+ | gene-YAL062W_ThermosaccDry | rna-NM_001178204.1_ThermosaccDry | cds-NP_009339.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:33041-34414:+ | gene-YAL062W_VR1 | rna-NM_001178204.1_VR1 | cds-NP_009339.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:4091-5464:+ | gene-YAL062W_ZTW1 | rna-NM_001178204.1_ZTW1 | cds-NP_009339.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:21784-23157:+ | gene-YAL062W_Sparadoxus | rna-NM_001178204.1_Sparadoxus | cds-NP_009339.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |