Gene name: GDE1
Reference locus (S288C): YPL110C
Gene biotype: protein_coding
Description: Glycerophosphocholine (GroPCho) phosphodiesterase; hydrolyzes GroPCho to choline and glycerolphosphate, for use as a phosphate source and as a precursor for phosphocholine synthesis; may interact with ribosomes
Top 10 interactors (score): NTE1 (0.99); GUT2 (0.965); PLB2 (0.956); PLB3 (0.948); EKI1 (0.933); CKI1 (0.927); PLB1 (0.926); PAH1 (0.919); SPO14 (0.911); PHO89 (0.895); VTC3 (0.885); VTC2 (0.86); GIT1 (0.84); VTC1 (0.805); GPC1 (0.774); GCD10 (0.763); PHO85 (0.757); PHO84 (0.756); CYB2 (0.748); TRM2 (0.737)
Homologues (species, bitscore): GPCPD1 (Homo sapiens, 172.2); Gpcpd1 (Mus musculus, 170.2); gpcpd1 (Danio rerio, 181.0); gpcpd1 (Xenopus tropicalis, 177.6); CG2818 (Drosophila melanogaster, 149.4); T05H10.7 (Caenorhabditis elegans, 156.0); GDPD3 (Arabidopsis thaliana, 135.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:318707-322378:- | gene-YPL110C_AKU4011 | rna-NM_001183924.1_AKU4011 | cds-NP_015215.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:524463-528134:- | gene-YPL110C_BG1 | rna-NM_001183924.1_BG1 | cds-NP_015215.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:344712-348383:- | gene-YPL110C_Bruggeman | rna-NM_001183924.1_Bruggeman | cds-NP_015215.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:341379-345050:- | gene-YPL110C_CAT1 | rna-NM_001183924.1_CAT1 | cds-NP_015215.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:322780-326451:- | gene-YPL110C_CBS1585 | rna-NM_001183924.1_CBS1585 | cds-NP_015215.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:337455-341126:- | gene-YPL110C_CBS436 | rna-NM_001183924.1_CBS436 | cds-NP_015215.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:327449-331120:- | gene-YPL110C_CBS6412 | rna-NM_001183924.1_CBS6412 | cds-NP_015215.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:319416-323087:- | gene-YPL110C_CBS6413 | rna-NM_001183924.1_CBS6413 | cds-NP_015215.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:341017-344688:- | gene-YPL110C_CENPK1137D | rna-NM_001183924.1_CENPK1137D | cds-NP_015215.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:317397-321068:- | gene-YPL110C_EthanolRed | rna-NM_001183924.1_EthanolRed | cds-NP_015215.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:324989-328660:- | gene-YPL110C_FaliES1 | rna-NM_001183924.1_FaliES1 | cds-NP_015215.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:37157-40828:+ | gene-YPL110C_JAY291 | rna-NM_001183924.1_JAY291 | cds-NP_015215.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:335952-339623:- | gene-YPL110C_MUCL30387 | rna-NM_001183924.1_MUCL30387 | cds-NP_015215.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:334222-337893:- | gene-YPL110C_MUCL30388 | rna-NM_001183924.1_MUCL30388 | cds-NP_015215.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:316109-319780:- | gene-YPL110C_MUCL39482 | rna-NM_001183924.1_MUCL39482 | cds-NP_015215.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:373797-377468:- | gene-YPL110C_MUCL42920 | rna-NM_001183924.1_MUCL42920 | cds-NP_015215.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:341051-344722:- | gene-YPL110C_NCIM3186 | rna-NM_001183924.1_NCIM3186 | cds-NP_015215.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:322562-326233:- | gene-YPL110C_NCYC1407 | rna-NM_001183924.1_NCYC1407 | cds-NP_015215.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:330054-333725:- | gene-YPL110C_PE2H3 | rna-NM_001183924.1_PE2H3 | cds-NP_015215.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:329677-333348:- | gene-YPL110C_PE2H4 | rna-NM_001183924.1_PE2H4 | cds-NP_015215.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:341068-344739:- | gene-YPL110C_S288C | rna-NM_001183924.1_S288C | cds-NP_015215.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:28943-32614:+ | gene-YPL110C_SA1 | rna-NM_001183924.1_SA1 | cds-NP_015215.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:324787-328458:- | gene-YPL110C_ThermosaccDry | rna-NM_001183924.1_ThermosaccDry | cds-NP_015215.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:339766-343437:- | gene-YPL110C_VR1 | rna-NM_001183924.1_VR1 | cds-NP_015215.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:324112-327783:- | gene-YPL110C_ZTW1 | rna-NM_001183924.1_ZTW1 | cds-NP_015215.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:325829-329501:- | gene-YPL110C_Sparadoxus | rna-NM_001183924.1_Sparadoxus | cds-NP_015215.1_Sparadoxus | 88.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |