Gene name: GDB1
Reference locus (S288C): YPR184W
Gene biotype: protein_coding
Description: Bifunctional 4-alpha-glucanotransferase/amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): GLC3 (0.999); GPH1 (0.999); PGM2 (0.997); SGA1 (0.996); GSY2 (0.991); IGD1 (0.979); UGP1 (0.977); GLG2 (0.974); SOL4 (0.958); GAD1 (0.953); PGM1 (0.95); TFS1 (0.949); TSL1 (0.939); YHL012W (0.939); RTN2 (0.932); GSY1 (0.929); YMR196W (0.927); DCS2 (0.927); MSC1 (0.927); GIP2 (0.923)
Homologues (species, bitscore): AGL (Homo sapiens, 949.5); Agl (Mus musculus, 964.1); agla (Danio rerio, 926.8); agl (Xenopus tropicalis, 952.6); CG9485 (Drosophila melanogaster, 847.8); agl-1 (Caenorhabditis elegans, 830.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:856320-860930:+ | gene-YPR184W_AKU4011 | rna-NM_001184281.1_AKU4011 | cds-NP_015510.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:36780-41390:- | gene-YPR184W_BG1 | rna-NM_001184281.1_BG1 | cds-NP_015510.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:937601-942211:+ | gene-YPR184W_Bruggeman | rna-NM_001184281.1_Bruggeman | cds-NP_015510.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:979660-984270:+ | gene-YPR184W_CAT1 | rna-NM_001184281.1_CAT1 | cds-NP_015510.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:861120-865730:+ | gene-YPR184W_CBS1585 | rna-NM_001184281.1_CBS1585 | cds-NP_015510.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:874666-879276:+ | gene-YPR184W_CBS436 | rna-NM_001184281.1_CBS436 | cds-NP_015510.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:862904-867514:+ | gene-YPR184W_CBS6412 | rna-NM_001184281.1_CBS6412 | cds-NP_015510.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:858049-862659:+ | gene-YPR184W_CBS6413 | rna-NM_001184281.1_CBS6413 | cds-NP_015510.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:902120-906730:+ | gene-YPR184W_CENPK1137D | rna-NM_001184281.1_CENPK1137D | cds-NP_015510.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1178071-1182681:+ | gene-YPR184W_EthanolRed | rna-NM_001184281.1_EthanolRed | cds-NP_015510.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:858144-862754:+ | gene-YPR184W_FaliES1 | rna-NM_001184281.1_FaliES1 | cds-NP_015510.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:45451-50061:+ | gene-YPR184W_JAY291 | rna-NM_001184281.1_JAY291 | cds-NP_015510.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:904834-909444:+ | gene-YPR184W_MUCL30387 | rna-NM_001184281.1_MUCL30387 | cds-NP_015510.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:878965-883575:+ | gene-YPR184W_MUCL30388 | rna-NM_001184281.1_MUCL30388 | cds-NP_015510.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:853321-857931:+ | gene-YPR184W_MUCL39482 | rna-NM_001184281.1_MUCL39482 | cds-NP_015510.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:917794-922404:+ | gene-YPR184W_MUCL42920 | rna-NM_001184281.1_MUCL42920 | cds-NP_015510.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:902027-906637:+ | gene-YPR184W_NCIM3186 | rna-NM_001184281.1_NCIM3186 | cds-NP_015510.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:861683-866293:+ | gene-YPR184W_NCYC1407 | rna-NM_001184281.1_NCYC1407 | cds-NP_015510.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:873975-878585:+ | gene-YPR184W_PE2H3 | rna-NM_001184281.1_PE2H3 | cds-NP_015510.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:873623-878233:+ | gene-YPR184W_PE2H4 | rna-NM_001184281.1_PE2H4 | cds-NP_015510.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:902044-906654:+ | gene-YPR184W_S288C | rna-NM_001184281.1_S288C | cds-NP_015510.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:19156-23766:- | gene-YPR184W_SA1 | rna-NM_001184281.1_SA1 | cds-NP_015510.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:857832-862442:+ | gene-YPR184W_ThermosaccDry | rna-NM_001184281.1_ThermosaccDry | cds-NP_015510.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:885630-890240:+ | gene-YPR184W_VR1 | rna-NM_001184281.1_VR1 | cds-NP_015510.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:860377-864987:+ | gene-YPR184W_ZTW1 | rna-NM_001184281.1_ZTW1 | cds-NP_015510.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:862444-867054:+ | gene-YPR184W_Sparadoxus | rna-NM_001184281.1_Sparadoxus | cds-NP_015510.1_Sparadoxus | 89.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |