Gene name: GCV3
Reference locus (S288C): YAL044C
Gene biotype: protein_coding
Description: H subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; also required for all protein lipoylation; expression is regulated by levels of 5,10-methylene-THF; Belongs to the GcvH family
Top 10 interactors (score): GCV1 (0.999); GCV2 (0.999); LIP2 (0.998); AIM22 (0.998); LPD1 (0.997); SHM2 (0.996); KGD2 (0.995); LIP5 (0.991); LAT1 (0.985); MTD1 (0.985); AGX1 (0.975); SHM1 (0.974); DFR1 (0.971); MET12 (0.97); MET13 (0.968); PDA1 (0.922); KGD1 (0.917); ACP1 (0.915); PDB1 (0.909); FAU1 (0.904)
Homologues (species, bitscore): GCSH (Homo sapiens, 112.8); Gcsh (Mus musculus, 114.4); gcsha (Danio rerio, 112.8); gcsh (Xenopus tropicalis, 108.2); ppl (Drosophila melanogaster, 111.3); gcsh-1 (Caenorhabditis elegans, 118.2); AT2G35120 (Arabidopsis thaliana, 111.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:43095-43607:- | gene-YAL044C_AKU4011 | rna-NM_001178189.1_AKU4011 | cds-NP_009355.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:30164-30676:- | gene-YAL044C_BG1 | rna-NM_001178189.1_BG1 | cds-NP_009355.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:57553-58065:- | gene-YAL044C_Bruggeman | rna-NM_001178189.1_Bruggeman | cds-NP_009355.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:44313-44825:- | gene-YAL044C_CAT1 | rna-NM_001178189.1_CAT1 | cds-NP_009355.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:56116-56628:- | gene-YAL044C_CBS1585 | rna-NM_001178189.1_CBS1585 | cds-NP_009355.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:56359-56871:- | gene-YAL044C_CBS436 | rna-NM_001178189.1_CBS436 | cds-NP_009355.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:42261-42773:- | gene-YAL044C_CBS6412 | rna-NM_001178189.1_CBS6412 | cds-NP_009355.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:54379-54891:- | gene-YAL044C_CBS6413 | rna-NM_001178189.1_CBS6413 | cds-NP_009355.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:58006-58518:- | gene-YAL044C_CENPK1137D | rna-NM_001178189.1_CENPK1137D | cds-NP_009355.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:44509-45021:- | gene-YAL044C_EthanolRed | rna-NM_001178189.1_EthanolRed | cds-NP_009355.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:58451-58963:- | gene-YAL044C_FaliES1 | rna-NM_001178189.1_FaliES1 | cds-NP_009355.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:30403-30915:- | gene-YAL044C_JAY291 | rna-NM_001178189.1_JAY291 | cds-NP_009355.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:59057-59569:- | gene-YAL044C_MUCL30387 | rna-NM_001178189.1_MUCL30387 | cds-NP_009355.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:55604-56116:- | gene-YAL044C_MUCL30388 | rna-NM_001178189.1_MUCL30388 | cds-NP_009355.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:54920-55432:- | gene-YAL044C_MUCL39482 | rna-NM_001178189.1_MUCL39482 | cds-NP_009355.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:57262-57774:- | gene-YAL044C_MUCL42920 | rna-NM_001178189.1_MUCL42920 | cds-NP_009355.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:57827-58339:- | gene-YAL044C_NCIM3186 | rna-NM_001178189.1_NCIM3186 | cds-NP_009355.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:42785-43297:- | gene-YAL044C_NCYC1407 | rna-NM_001178189.1_NCYC1407 | cds-NP_009355.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:44667-45179:- | gene-YAL044C_PE2H3 | rna-NM_001178189.1_PE2H3 | cds-NP_009355.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:44386-44898:- | gene-YAL044C_PE2H4 | rna-NM_001178189.1_PE2H4 | cds-NP_009355.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:57950-58462:- | gene-YAL044C_S288C | rna-NM_001178189.1_S288C | cds-NP_009355.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:32560-33072:- | gene-YAL044C_SA1 | rna-NM_001178189.1_SA1 | cds-NP_009355.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:58661-59173:- | gene-YAL044C_ThermosaccDry | rna-NM_001178189.1_ThermosaccDry | cds-NP_009355.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:59926-60438:- | gene-YAL044C_VR1 | rna-NM_001178189.1_VR1 | cds-NP_009355.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:30470-30982:- | gene-YAL044C_ZTW1 | rna-NM_001178189.1_ZTW1 | cds-NP_009355.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:48150-48662:- | gene-YAL044C_Sparadoxus | rna-NM_001178189.1_Sparadoxus | cds-NP_009355.3_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |