Gene name: GCV1
Reference locus (S288C): YDR019C
Gene biotype: protein_coding
Description: T subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm
Top 10 interactors (score): GCV3 (0.999); SHM2 (0.999); GCV2 (0.999); MTD1 (0.998); SHM1 (0.998); LPD1 (0.997); ADE17 (0.994); MIS1 (0.991); MET13 (0.985); ADE3 (0.985); AGX1 (0.984); ADE16 (0.979); ADE8 (0.978); MET12 (0.978); DFR1 (0.978); CDC21 (0.97); GLT1 (0.959); FMT1 (0.951); GDH3 (0.949); GDH1 (0.939)
Homologues (species, bitscore): AMT (Homo sapiens, 270.8); Amt (Mus musculus, 273.9); amt (Danio rerio, 288.5); amt (Xenopus tropicalis, 266.5); CG6415 (Drosophila melanogaster, 275.0); gcst-1 (Caenorhabditis elegans, 261.2); AT1G11860 (Arabidopsis thaliana, 285.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:470090-471292:- | gene-YDR019C_AKU4011 | rna-NM_001180327.1_AKU4011 | cds-NP_010302.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:78504-79706:+ | gene-YDR019C_BG1 | rna-NM_001180327.1_BG1 | cds-NP_010302.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:498332-499534:- | gene-YDR019C_Bruggeman | rna-NM_001180327.1_Bruggeman | cds-NP_010302.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:483399-484601:- | gene-YDR019C_CAT1 | rna-NM_001180327.1_CAT1 | cds-NP_010302.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:466681-467883:- | gene-YDR019C_CBS1585 | rna-NM_001180327.1_CBS1585 | cds-NP_010302.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:483664-484866:- | gene-YDR019C_CBS436 | rna-NM_001180327.1_CBS436 | cds-NP_010302.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:463591-464793:- | gene-YDR019C_CBS6412 | rna-NM_001180327.1_CBS6412 | cds-NP_010302.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:485870-487072:- | gene-YDR019C_CBS6413 | rna-NM_001180327.1_CBS6413 | cds-NP_010302.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:483128-484330:- | gene-YDR019C_CENPK1137D | rna-NM_001180327.1_CENPK1137D | cds-NP_010302.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:478112-479314:- | gene-YDR019C_EthanolRed | rna-NM_001180327.1_EthanolRed | cds-NP_010302.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:484471-485673:- | gene-YDR019C_FaliES1 | rna-NM_001180327.1_FaliES1 | cds-NP_010302.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000042.1:27922-29124:+ | gene-YDR019C_JAY291 | rna-NM_001180327.1_JAY291 | cds-NP_010302.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:483912-485114:- | gene-YDR019C_MUCL30387 | rna-NM_001180327.1_MUCL30387 | cds-NP_010302.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:474374-475576:- | gene-YDR019C_MUCL30388 | rna-NM_001180327.1_MUCL30388 | cds-NP_010302.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:468049-469251:- | gene-YDR019C_MUCL39482 | rna-NM_001180327.1_MUCL39482 | cds-NP_010302.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:389701-390903:- | gene-YDR019C_MUCL42920 | rna-NM_001180327.1_MUCL42920 | cds-NP_010302.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:484086-485288:- | gene-YDR019C_NCIM3186 | rna-NM_001180327.1_NCIM3186 | cds-NP_010302.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:467482-468684:- | gene-YDR019C_NCYC1407 | rna-NM_001180327.1_NCYC1407 | cds-NP_010302.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:482568-483770:- | gene-YDR019C_PE2H3 | rna-NM_001180327.1_PE2H3 | cds-NP_010302.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:481873-483075:- | gene-YDR019C_PE2H4 | rna-NM_001180327.1_PE2H4 | cds-NP_010302.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:484163-485365:- | gene-YDR019C_S288C | rna-NM_001180327.1_S288C | cds-NP_010302.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:11333-12535:- | gene-YDR019C_SA1 | rna-NM_001180327.1_SA1 | cds-NP_010302.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:483950-485152:- | gene-YDR019C_ThermosaccDry | rna-NM_001180327.1_ThermosaccDry | cds-NP_010302.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:488519-489721:- | gene-YDR019C_VR1 | rna-NM_001180327.1_VR1 | cds-NP_010302.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:481844-483046:- | gene-YDR019C_ZTW1 | rna-NM_001180327.1_ZTW1 | cds-NP_010302.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:485615-486814:- | gene-YDR019C_Sparadoxus | rna-NM_001180327.1_Sparadoxus | cds-NP_010302.1_Sparadoxus | 90.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |