Gene name: GCN4
Reference locus (S288C): YEL009C
Gene biotype: protein_coding
Description: General control protein GCN4; bZIP transcriptional activator of amino acid biosynthetic genes; activator responds to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels; Belongs to the bZIP family. GCN4 subfamily
Top 10 interactors (score): GAL11 (0.999); SKO1 (0.999); ACA1 (0.996); GCN2 (0.992); CST6 (0.992); SLT2 (0.989); PHO85 (0.985); HOG1 (0.97); PCL5 (0.969); RPL40B (0.963); RPL40A (0.963); LYS14 (0.96); GLN3 (0.957); SMK1 (0.954); SNF5 (0.954); GCN5 (0.942); SNF2 (0.939); SUI2 (0.935); BAS1 (0.933); SPT15 (0.922)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:132611-133456:- | gene-YEL009C_AKU4011 | rna-NM_001178824.3_AKU4011 | cds-NP_010907.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:292201-293046:+ | gene-YEL009C_BG1 | rna-NM_001178824.3_BG1 | cds-NP_010907.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:139128-139973:- | gene-YEL009C_Bruggeman | rna-NM_001178824.3_Bruggeman | cds-NP_010907.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:135557-136402:- | gene-YEL009C_CAT1 | rna-NM_001178824.3_CAT1 | cds-NP_010907.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:132923-133768:- | gene-YEL009C_CBS1585 | rna-NM_001178824.3_CBS1585 | cds-NP_010907.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:134184-135029:- | gene-YEL009C_CBS436 | rna-NM_001178824.3_CBS436 | cds-NP_010907.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:132830-133675:- | gene-YEL009C_CBS6412 | rna-NM_001178824.3_CBS6412 | cds-NP_010907.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:137465-138310:- | gene-YEL009C_CBS6413 | rna-NM_001178824.3_CBS6413 | cds-NP_010907.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:136745-137590:- | gene-YEL009C_CENPK1137D | rna-NM_001178824.3_CENPK1137D | cds-NP_010907.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:133277-134122:- | gene-YEL009C_EthanolRed | rna-NM_001178824.3_EthanolRed | cds-NP_010907.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:133536-134381:- | gene-YEL009C_FaliES1 | rna-NM_001178824.3_FaliES1 | cds-NP_010907.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:527-1372:- | gene-YEL009C_JAY291 | rna-NM_001178824.3_JAY291 | cds-NP_010907.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:136830-137675:- | gene-YEL009C_MUCL30387 | rna-NM_001178824.3_MUCL30387 | cds-NP_010907.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:133394-134239:- | gene-YEL009C_MUCL30388 | rna-NM_001178824.3_MUCL30388 | cds-NP_010907.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:131956-132801:- | gene-YEL009C_MUCL39482 | rna-NM_001178824.3_MUCL39482 | cds-NP_010907.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:136537-137382:- | gene-YEL009C_MUCL42920 | rna-NM_001178824.3_MUCL42920 | cds-NP_010907.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:138917-139762:- | gene-YEL009C_NCIM3186 | rna-NM_001178824.3_NCIM3186 | cds-NP_010907.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:137032-137877:- | gene-YEL009C_NCYC1407 | rna-NM_001178824.3_NCYC1407 | cds-NP_010907.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:141355-142200:- | gene-YEL009C_PE2H3 | rna-NM_001178824.3_PE2H3 | cds-NP_010907.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:137270-138115:- | gene-YEL009C_PE2H4 | rna-NM_001178824.3_PE2H4 | cds-NP_010907.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:138918-139763:- | gene-YEL009C_S288C | rna-NM_001178824.3_S288C | cds-NP_010907.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:103807-104652:+ | gene-YEL009C_SA1 | rna-NM_001178824.3_SA1 | cds-NP_010907.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:133941-134786:- | gene-YEL009C_ThermosaccDry | rna-NM_001178824.3_ThermosaccDry | cds-NP_010907.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:133446-134291:- | gene-YEL009C_VR1 | rna-NM_001178824.3_VR1 | cds-NP_010907.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:131959-132804:- | gene-YEL009C_ZTW1 | rna-NM_001178824.3_ZTW1 | cds-NP_010907.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:136694-137542:- | gene-YEL009C_Sparadoxus | rna-NM_001178824.3_Sparadoxus | cds-NP_010907.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |