Gene name: GCN20
Reference locus (S288C): YFR009W
Gene biotype: protein_coding
Description: Protein GCN20; Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily
Top 10 interactors (score): GCN1 (0.999); GCN2 (0.992); HTS1 (0.864); YDR061W (0.771); GCN4 (0.747); ADP1 (0.735); GCN3 (0.709); RTC6 (0.703); TMA46 (0.698); SLC1 (0.679); FRS2 (0.656); RLI1 (0.638); TMA108 (0.635); RBG2 (0.617); TAZ1 (0.613); RAD3 (0.611); SEC7 (0.593); SHM2 (0.587); MRPS17 (0.584); APM2 (0.582)
Homologues (species, bitscore): ABCF3 (Homo sapiens, 574.7); Abcf3 (Mus musculus, 581.3); abcf2b (Danio rerio, 425.2); abcf3 (Xenopus tropicalis, 587.8); CG9330 (Drosophila melanogaster, 567.4); abcf-3 (Caenorhabditis elegans, 566.6); ABCF3 (Arabidopsis thaliana, 504.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:152932-155190:+ | gene-YFR009W_AKU4011 | rna-NM_001179974.1_AKU4011 | cds-NP_116664.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:105649-107907:- | gene-YFR009W_BG1 | rna-NM_001179974.1_BG1 | cds-NP_116664.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:153352-155610:+ | gene-YFR009W_Bruggeman | rna-NM_001179974.1_Bruggeman | cds-NP_116664.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:158016-160274:+ | gene-YFR009W_CAT1 | rna-NM_001179974.1_CAT1 | cds-NP_116664.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:153756-156014:+ | gene-YFR009W_CBS1585 | rna-NM_001179974.1_CBS1585 | cds-NP_116664.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:127611-129869:+ | gene-YFR009W_CBS436 | rna-NM_001179974.1_CBS436 | cds-NP_116664.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:153496-155754:+ | gene-YFR009W_CBS6412 | rna-NM_001179974.1_CBS6412 | cds-NP_116664.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:156009-158267:+ | gene-YFR009W_CBS6413 | rna-NM_001179974.1_CBS6413 | cds-NP_116664.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:158620-160878:+ | gene-YFR009W_CENPK1137D | rna-NM_001179974.1_CENPK1137D | cds-NP_116664.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:151921-154179:+ | gene-YFR009W_EthanolRed | rna-NM_001179974.1_EthanolRed | cds-NP_116664.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:153568-155826:+ | gene-YFR009W_FaliES1 | rna-NM_001179974.1_FaliES1 | cds-NP_116664.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000452.1:413-2671:+ | gene-YFR009W_JAY291 | rna-NM_001179974.1_JAY291 | cds-NP_116664.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:155304-157562:+ | gene-YFR009W_MUCL30387 | rna-NM_001179974.1_MUCL30387 | cds-NP_116664.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:152111-154369:+ | gene-YFR009W_MUCL30388 | rna-NM_001179974.1_MUCL30388 | cds-NP_116664.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:152199-154457:+ | gene-YFR009W_MUCL39482 | rna-NM_001179974.1_MUCL39482 | cds-NP_116664.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:151467-153725:+ | gene-YFR009W_MUCL42920 | rna-NM_001179974.1_MUCL42920 | cds-NP_116664.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:162487-164745:+ | gene-YFR009W_NCIM3186 | rna-NM_001179974.1_NCIM3186 | cds-NP_116664.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:153217-155475:+ | gene-YFR009W_NCYC1407 | rna-NM_001179974.1_NCYC1407 | cds-NP_116664.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:172291-174549:+ | gene-YFR009W_PE2H3 | rna-NM_001179974.1_PE2H3 | cds-NP_116664.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:171839-174097:+ | gene-YFR009W_PE2H4 | rna-NM_001179974.1_PE2H4 | cds-NP_116664.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:162488-164746:+ | gene-YFR009W_S288C | rna-NM_001179974.1_S288C | cds-NP_116664.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:159468-161726:- | gene-YFR009W_SA1 | rna-NM_001179974.1_SA1 | cds-NP_116664.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:152726-154984:+ | gene-YFR009W_ThermosaccDry | rna-NM_001179974.1_ThermosaccDry | cds-NP_116664.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:168189-170447:+ | gene-YFR009W_VR1 | rna-NM_001179974.1_VR1 | cds-NP_116664.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:83176-85434:+ | gene-YFR009W_ZTW1 | rna-NM_001179974.1_ZTW1 | cds-NP_116664.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:177051-179308:+ | gene-YFR009W_Sparadoxus | rna-NM_001179974.1_Sparadoxus | cds-NP_116664.1_Sparadoxus | 91.8 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |