Gene name: GCD10
Reference locus (S288C): YNL062C
Gene biotype: protein_coding
Description: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression
Top 10 interactors (score): GCD14 (0.999); TRM8 (0.999); TRM11 (0.998); TRM82 (0.998); PRT1 (0.996); NOP2 (0.996); TRM1 (0.995); NCL1 (0.993); LHP1 (0.992); YTM1 (0.989); NOC2 (0.986); KRE33 (0.985); ERB1 (0.984); RPF2 (0.984); UTP21 (0.984); NOG1 (0.983); SPB1 (0.982); NOC4 (0.981); SUI1 (0.981); PWP2 (0.98)
Homologues (species, bitscore): TRMT6 (Homo sapiens, 114.4); Trmt6 (Mus musculus, 116.7); trmt6 (Danio rerio, 108.2); trmt6 (Xenopus tropicalis, 96.3); CG9596 (Drosophila melanogaster, 90.5); ZK858.7 (Caenorhabditis elegans, 69.3); AT2G45730 (Arabidopsis thaliana, 85.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:502451-503887:- | gene-YNL062C_AKU4011 | rna-NM_001182900.3_AKU4011 | cds-NP_014337.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:406458-407894:- | gene-YNL062C_BG1 | rna-NM_001182900.3_BG1 | cds-NP_014337.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:513170-514606:- | gene-YNL062C_Bruggeman | rna-NM_001182900.3_Bruggeman | cds-NP_014337.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:556162-557598:- | gene-YNL062C_CAT1 | rna-NM_001182900.3_CAT1 | cds-NP_014337.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:503121-504557:- | gene-YNL062C_CBS1585 | rna-NM_001182900.3_CBS1585 | cds-NP_014337.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:571419-572855:- | gene-YNL062C_CBS436 | rna-NM_001182900.3_CBS436 | cds-NP_014337.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:498214-499650:- | gene-YNL062C_CBS6412 | rna-NM_001182900.3_CBS6412 | cds-NP_014337.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:499530-500966:- | gene-YNL062C_CBS6413 | rna-NM_001182900.3_CBS6413 | cds-NP_014337.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:502740-504176:- | gene-YNL062C_CENPK1137D | rna-NM_001182900.3_CENPK1137D | cds-NP_014337.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:505272-506708:- | gene-YNL062C_EthanolRed | rna-NM_001182900.3_EthanolRed | cds-NP_014337.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:495797-497233:- | gene-YNL062C_FaliES1 | rna-NM_001182900.3_FaliES1 | cds-NP_014337.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:10891-12327:- | gene-YNL062C_JAY291 | rna-NM_001182900.3_JAY291 | cds-NP_014337.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:509332-510768:- | gene-YNL062C_MUCL30387 | rna-NM_001182900.3_MUCL30387 | cds-NP_014337.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:544983-546419:- | gene-YNL062C_MUCL30388 | rna-NM_001182900.3_MUCL30388 | cds-NP_014337.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:500523-501959:- | gene-YNL062C_MUCL39482 | rna-NM_001182900.3_MUCL39482 | cds-NP_014337.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:504437-505873:- | gene-YNL062C_MUCL42920 | rna-NM_001182900.3_MUCL42920 | cds-NP_014337.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:508745-510181:- | gene-YNL062C_NCIM3186 | rna-NM_001182900.3_NCIM3186 | cds-NP_014337.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:502574-504010:- | gene-YNL062C_NCYC1407 | rna-NM_001182900.3_NCYC1407 | cds-NP_014337.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:505805-507241:- | gene-YNL062C_PE2H3 | rna-NM_001182900.3_PE2H3 | cds-NP_014337.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:500880-502316:- | gene-YNL062C_PE2H4 | rna-NM_001182900.3_PE2H4 | cds-NP_014337.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:508776-510212:- | gene-YNL062C_S288C | rna-NM_001182900.3_S288C | cds-NP_014337.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:93726-95162:- | gene-YNL062C_SA1 | rna-NM_001182900.3_SA1 | cds-NP_014337.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:496672-498108:- | gene-YNL062C_ThermosaccDry | rna-NM_001182900.3_ThermosaccDry | cds-NP_014337.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:515768-517204:- | gene-YNL062C_VR1 | rna-NM_001182900.3_VR1 | cds-NP_014337.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:406010-407446:- | gene-YNL062C_ZTW1 | rna-NM_001182900.3_ZTW1 | cds-NP_014337.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:512264-513700:- | gene-YNL062C_Sparadoxus | rna-NM_001182900.3_Sparadoxus | cds-NP_014337.3_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |