Gene name: GAT1
Reference locus (S288C): YFL021W
Gene biotype: protein_coding
Description: Transcriptional regulatory protein GAT1; Transcriptional activator of nitrogen catabolite repression genes; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p; different translational starts produce two major and two minor isoforms that are differentially regulated and localized
Top 10 interactors (score): GLN3 (0.961); URE2 (0.92); GAP1 (0.839); MEP2 (0.816); GLN1 (0.813); GCN5 (0.807); HTB1 (0.784); MCM1 (0.761); GAT2 (0.748); SIT4 (0.739); MIG1 (0.735); MEP1 (0.734); MEP3 (0.722); MGA1 (0.714); RIM101 (0.702); PAU5 (0.699); HCM1 (0.697); SRP1 (0.697); GDH1 (0.68); DAL5 (0.678)
Homologues (species, bitscore): GATA4 (Homo sapiens, 83.6); Gata4 (Mus musculus, 84.0); gata5 (Danio rerio, 79.3); gata4 (Xenopus tropicalis, 81.6); srp (Drosophila melanogaster, 81.6); elt-1 (Caenorhabditis elegans, 75.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:92406-93934:+ | gene-YFL021W_AKU4011 | rna-NM_001179945.1_AKU4011 | cds-NP_116632.1_AKU4011 | 98.8 | 99.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000199.1:1685-3231:- | gene-YFL021W_BG1 | rna-NM_001179945.1_BG1 | cds-NP_116632.1_BG1 | 98.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:91272-92810:+ | gene-YFL021W_Bruggeman | rna-NM_001179945.1_Bruggeman | cds-NP_116632.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:96690-98238:+ | gene-YFL021W_CAT1 | rna-NM_001179945.1_CAT1 | cds-NP_116632.1_CAT1 | 98.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:93219-94753:+ | gene-YFL021W_CBS1585 | rna-NM_001179945.1_CBS1585 | cds-NP_116632.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:66697-68239:+ | gene-YFL021W_CBS436 | rna-NM_001179945.1_CBS436 | cds-NP_116632.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:92948-94482:+ | gene-YFL021W_CBS6412 | rna-NM_001179945.1_CBS6412 | cds-NP_116632.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:95483-97017:+ | gene-YFL021W_CBS6413 | rna-NM_001179945.1_CBS6413 | cds-NP_116632.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:92483-94009:+ | gene-YFL021W_CENPK1137D | rna-NM_001179945.1_CENPK1137D | cds-NP_116632.1_CENPK1137D | 98.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:91403-92929:+ | gene-YFL021W_EthanolRed | rna-NM_001179945.1_EthanolRed | cds-NP_116632.1_EthanolRed | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:93043-94569:+ | gene-YFL021W_FaliES1 | rna-NM_001179945.1_FaliES1 | cds-NP_116632.1_FaliES1 | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:101344-102888:+ | gene-YFL021W_JAY291 | rna-NM_001179945.1_JAY291 | cds-NP_116632.1_JAY291 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:93374-94916:+ | gene-YFL021W_MUCL30387 | rna-NM_001179945.1_MUCL30387 | cds-NP_116632.1_MUCL30387 | 98.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:91307-92849:+ | gene-YFL021W_MUCL30388 | rna-NM_001179945.1_MUCL30388 | cds-NP_116632.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:91599-93133:+ | gene-YFL021W_MUCL39482 | rna-NM_001179945.1_MUCL39482 | cds-NP_116632.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:90684-92222:+ | gene-YFL021W_MUCL42920 | rna-NM_001179945.1_MUCL42920 | cds-NP_116632.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:95965-97497:+ | gene-YFL021W_NCIM3186 | rna-NM_001179945.1_NCIM3186 | cds-NP_116632.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:92688-94222:+ | gene-YFL021W_NCYC1407 | rna-NM_001179945.1_NCYC1407 | cds-NP_116632.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:112539-114083:+ | gene-YFL021W_PE2H3 | rna-NM_001179945.1_PE2H3 | cds-NP_116632.1_PE2H3 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:112087-113631:+ | gene-YFL021W_PE2H4 | rna-NM_001179945.1_PE2H4 | cds-NP_116632.1_PE2H4 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:95966-97498:+ | gene-YFL021W_S288C | rna-NM_001179945.1_S288C | cds-NP_116632.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000105.1:8703-10219:+ | gene-YFL021W_SA1 | rna-NM_001179945.1_SA1 | cds-NP_116632.1_SA1 | 97.3 | 98.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:92225-93751:+ | gene-YFL021W_ThermosaccDry | rna-NM_001179945.1_ThermosaccDry | cds-NP_116632.1_ThermosaccDry | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:101231-102775:+ | gene-YFL021W_VR1 | rna-NM_001179945.1_VR1 | cds-NP_116632.1_VR1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:22666-24194:+ | gene-YFL021W_ZTW1 | rna-NM_001179945.1_ZTW1 | cds-NP_116632.1_ZTW1 | 99.1 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:116397-117908:+ | gene-YFL021W_Sparadoxus | rna-NM_001179945.1_Sparadoxus | cds-NP_116632.1_Sparadoxus | 89.8 | 98.2 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |