Gene name: GAR1
Reference locus (S288C): YHR089C
Gene biotype: protein_coding
Description: H/ACA ribonucleoprotein complex subunit 1; Protein component of the H/ACA snoRNP pseudouridylase complex; involved in the modification and cleavage of the 18S pre-rRNA; Belongs to the GAR1 family
Top 10 interactors (score): NHP2 (0.999); NOP10 (0.999); NOP56 (0.999); NOP1 (0.999); CBF5 (0.999); NOP58 (0.999); NIP7 (0.998); NSR1 (0.998); EBP2 (0.997); BRX1 (0.996); HAS1 (0.995); SNU13 (0.995); SHQ1 (0.994); ERB1 (0.993); MRT4 (0.98); NAF1 (0.98); RPA135 (0.979); YTM1 (0.978); GUA1 (0.977); RRP15 (0.974)
Homologues (species, bitscore): GAR1 (Homo sapiens, 184.1); Gar1 (Mus musculus, 191.4); gar1 (Danio rerio, 198.7); gar1 (Xenopus tropicalis, 194.9); CG4038 (Drosophila melanogaster, 169.9); Y66H1A.4 (Caenorhabditis elegans, 182.2); AT3G03920 (Arabidopsis thaliana, 177.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:269091-269708:- | gene-YHR089C_AKU4011 | rna-NM_001179219.1_AKU4011 | cds-NP_011957.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000207.1:156-773:- | gene-YHR089C_BG1 | rna-NM_001179219.1_BG1 | cds-NP_011957.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:276919-277536:- | gene-YHR089C_Bruggeman | rna-NM_001179219.1_Bruggeman | cds-NP_011957.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:272058-272675:- | gene-YHR089C_CAT1 | rna-NM_001179219.1_CAT1 | cds-NP_011957.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:268133-268750:- | gene-YHR089C_CBS1585 | rna-NM_001179219.1_CBS1585 | cds-NP_011957.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:265996-266613:- | gene-YHR089C_CBS436 | rna-NM_001179219.1_CBS436 | cds-NP_011957.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:271481-272098:- | gene-YHR089C_CBS6412 | rna-NM_001179219.1_CBS6412 | cds-NP_011957.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:269172-269789:- | gene-YHR089C_CBS6413 | rna-NM_001179219.1_CBS6413 | cds-NP_011957.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:275847-276464:- | gene-YHR089C_CENPK1137D | rna-NM_001179219.1_CENPK1137D | cds-NP_011957.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:328697-329314:- | gene-YHR089C_EthanolRed | rna-NM_001179219.1_EthanolRed | cds-NP_011957.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:269501-270118:- | gene-YHR089C_FaliES1 | rna-NM_001179219.1_FaliES1 | cds-NP_011957.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:52225-52842:- | gene-YHR089C_JAY291 | rna-NM_001179219.1_JAY291 | cds-NP_011957.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:276442-277032:- | gene-YHR089C_MUCL30387 | rna-NM_001179219.1_MUCL30387 | cds-NP_011957.1_MUCL30387 | 95.1 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:276302-276919:- | gene-YHR089C_MUCL30388 | rna-NM_001179219.1_MUCL30388 | cds-NP_011957.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:268456-269073:- | gene-YHR089C_MUCL39482 | rna-NM_001179219.1_MUCL39482 | cds-NP_011957.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:275204-275821:- | gene-YHR089C_MUCL42920 | rna-NM_001179219.1_MUCL42920 | cds-NP_011957.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:282563-283180:- | gene-YHR089C_NCIM3186 | rna-NM_001179219.1_NCIM3186 | cds-NP_011957.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:270921-271538:- | gene-YHR089C_NCYC1407 | rna-NM_001179219.1_NCYC1407 | cds-NP_011957.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:270590-271207:- | gene-YHR089C_PE2H3 | rna-NM_001179219.1_PE2H3 | cds-NP_011957.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:278037-278654:- | gene-YHR089C_PE2H4 | rna-NM_001179219.1_PE2H4 | cds-NP_011957.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:282681-283298:- | gene-YHR089C_S288C | rna-NM_001179219.1_S288C | cds-NP_011957.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:75687-76304:+ | gene-YHR089C_SA1 | rna-NM_001179219.1_SA1 | cds-NP_011957.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:270592-271209:- | gene-YHR089C_ThermosaccDry | rna-NM_001179219.1_ThermosaccDry | cds-NP_011957.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:278466-279083:- | gene-YHR089C_VR1 | rna-NM_001179219.1_VR1 | cds-NP_011957.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:262145-262762:- | gene-YHR089C_ZTW1 | rna-NM_001179219.1_ZTW1 | cds-NP_011957.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:267865-268485:- | gene-YHR089C_Sparadoxus | rna-NM_001179219.1_Sparadoxus | cds-NP_011957.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |