Gene name: FIR1
Reference locus (S288C): YER032W
Gene biotype: protein_coding
Description: Factor interacting with REF2; Protein involved in 3' mRNA processing; interacts with Ref2p; APCC(Cdh1) substrate; potential Cdc28p substrate
Top 10 interactors (score): CDC28 (0.787); REF2 (0.76); BOP3 (0.717); YKR045C (0.71); FAU1 (0.694); RGL1 (0.68); YEL074W (0.679); DSF2 (0.65); AIM9 (0.62); FIN1 (0.619); YPR174C (0.618); ZRG8 (0.615); YHR131C (0.592); YNL144C (0.573); HHY1 (0.573); MOB2 (0.568); SBE2 (0.567); CBK1 (0.547); EMP65 (0.526); YCR007C (0.525)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:209090-211720:+ | gene-YER032W_AKU4011 | rna-NM_001178923.3_AKU4011 | cds-NP_010949.4_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:214003-216633:- | gene-YER032W_BG1 | rna-NM_001178923.3_BG1 | cds-NP_010949.4_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:217991-220621:+ | gene-YER032W_Bruggeman | rna-NM_001178923.3_Bruggeman | cds-NP_010949.4_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:212110-214740:+ | gene-YER032W_CAT1 | rna-NM_001178923.3_CAT1 | cds-NP_010949.4_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:209013-211643:+ | gene-YER032W_CBS1585 | rna-NM_001178923.3_CBS1585 | cds-NP_010949.4_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:210964-213594:+ | gene-YER032W_CBS436 | rna-NM_001178923.3_CBS436 | cds-NP_010949.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:209257-211887:+ | gene-YER032W_CBS6412 | rna-NM_001178923.3_CBS6412 | cds-NP_010949.4_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:214501-217131:+ | gene-YER032W_CBS6413 | rna-NM_001178923.3_CBS6413 | cds-NP_010949.4_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:213002-215632:+ | gene-YER032W_CENPK1137D | rna-NM_001178923.3_CENPK1137D | cds-NP_010949.4_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:209722-212352:+ | gene-YER032W_EthanolRed | rna-NM_001178923.3_EthanolRed | cds-NP_010949.4_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:209987-212617:+ | gene-YER032W_FaliES1 | rna-NM_001178923.3_FaliES1 | cds-NP_010949.4_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:7764-10394:+ | gene-YER032W_JAY291 | rna-NM_001178923.3_JAY291 | cds-NP_010949.4_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:213423-216053:+ | gene-YER032W_MUCL30387 | rna-NM_001178923.3_MUCL30387 | cds-NP_010949.4_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:209655-212285:+ | gene-YER032W_MUCL30388 | rna-NM_001178923.3_MUCL30388 | cds-NP_010949.4_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:208057-210687:+ | gene-YER032W_MUCL39482 | rna-NM_001178923.3_MUCL39482 | cds-NP_010949.4_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:215152-217782:+ | gene-YER032W_MUCL42920 | rna-NM_001178923.3_MUCL42920 | cds-NP_010949.4_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:215062-217692:+ | gene-YER032W_NCIM3186 | rna-NM_001178923.3_NCIM3186 | cds-NP_010949.4_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:213128-215758:+ | gene-YER032W_NCYC1407 | rna-NM_001178923.3_NCYC1407 | cds-NP_010949.4_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:223772-226402:+ | gene-YER032W_PE2H3 | rna-NM_001178923.3_PE2H3 | cds-NP_010949.4_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:213712-216342:+ | gene-YER032W_PE2H4 | rna-NM_001178923.3_PE2H4 | cds-NP_010949.4_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:215063-217693:+ | gene-YER032W_S288C | rna-NM_001178923.3_S288C | cds-NP_010949.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:25991-28621:- | gene-YER032W_SA1 | rna-NM_001178923.3_SA1 | cds-NP_010949.4_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:210758-213388:+ | gene-YER032W_ThermosaccDry | rna-NM_001178923.3_ThermosaccDry | cds-NP_010949.4_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:209868-212498:+ | gene-YER032W_VR1 | rna-NM_001178923.3_VR1 | cds-NP_010949.4_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:207970-210600:+ | gene-YER032W_ZTW1 | rna-NM_001178923.3_ZTW1 | cds-NP_010949.4_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:211888-214518:+ | gene-YER032W_Sparadoxus | rna-NM_001178923.3_Sparadoxus | cds-NP_010949.4_Sparadoxus | 84.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |