Gene name: FIP1
Reference locus (S288C): YJR093C
Gene biotype: protein_coding
Description: Subunit of cleavage polyadenylation factor (CPF); interacts directly with poly(A) polymerase (Pap1p) to regulate its activity; bridging factor that links Pap1p and the CPF complex via Yth1p; Belongs to the FIP1 family
Top 10 interactors (score): PFS2 (0.999); SSU72 (0.999); YTH1 (0.999); CFT2 (0.999); CFT1 (0.999); MPE1 (0.999); PAP1 (0.999); PTA1 (0.999); PTI1 (0.999); REF2 (0.999); YSH1 (0.999); SYC1 (0.999); RNA14 (0.999); SWD2 (0.999); PCF11 (0.999); CLP1 (0.991); RNA15 (0.985); GLC7 (0.983); NSP1 (0.931); NUP2 (0.915)
Homologues (species, bitscore): FIP1L1 (Homo sapiens, 77.8); Fip1l1 (Mus musculus, 77.8); fip1l1a (Danio rerio, 79.7); fip1l1 (Xenopus tropicalis, 80.9); Fip1 (Drosophila melanogaster, 78.6); fipp-1 (Caenorhabditis elegans, 72.0); FIP1[V] (Arabidopsis thaliana, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:574740-575723:- | gene-YJR093C_AKU4011 | rna-NM_001181750.1_AKU4011 | cds-NP_012626.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:31852-32835:+ | gene-YJR093C_BG1 | rna-NM_001181750.1_BG1 | cds-NP_012626.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:588254-589237:- | gene-YJR093C_Bruggeman | rna-NM_001181750.1_Bruggeman | cds-NP_012626.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:592649-593632:- | gene-YJR093C_CAT1 | rna-NM_001181750.1_CAT1 | cds-NP_012626.1_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:586804-587787:- | gene-YJR093C_CBS1585 | rna-NM_001181750.1_CBS1585 | cds-NP_012626.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:604890-605873:- | gene-YJR093C_CBS436 | rna-NM_001181750.1_CBS436 | cds-NP_012626.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:573952-574935:- | gene-YJR093C_CBS6412 | rna-NM_001181750.1_CBS6412 | cds-NP_012626.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:576246-577229:- | gene-YJR093C_CBS6413 | rna-NM_001181750.1_CBS6413 | cds-NP_012626.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:585564-586547:- | gene-YJR093C_CENPK1137D | rna-NM_001181750.1_CENPK1137D | cds-NP_012626.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:579139-580122:- | gene-YJR093C_EthanolRed | rna-NM_001181750.1_EthanolRed | cds-NP_012626.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:590605-591588:- | gene-YJR093C_FaliES1 | rna-NM_001181750.1_FaliES1 | cds-NP_012626.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:97809-98792:+ | gene-YJR093C_JAY291 | rna-NM_001181750.1_JAY291 | cds-NP_012626.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:588784-589767:- | gene-YJR093C_MUCL30387 | rna-NM_001181750.1_MUCL30387 | cds-NP_012626.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:586080-587063:- | gene-YJR093C_MUCL30388 | rna-NM_001181750.1_MUCL30388 | cds-NP_012626.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:580264-581247:- | gene-YJR093C_MUCL39482 | rna-NM_001181750.1_MUCL39482 | cds-NP_012626.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:584510-585493:- | gene-YJR093C_MUCL42920 | rna-NM_001181750.1_MUCL42920 | cds-NP_012626.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:603199-604182:- | gene-YJR093C_NCIM3186 | rna-NM_001181750.1_NCIM3186 | cds-NP_012626.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:577830-578813:- | gene-YJR093C_NCYC1407 | rna-NM_001181750.1_NCYC1407 | cds-NP_012626.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:595724-596707:- | gene-YJR093C_PE2H3 | rna-NM_001181750.1_PE2H3 | cds-NP_012626.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:589413-590396:- | gene-YJR093C_PE2H4 | rna-NM_001181750.1_PE2H4 | cds-NP_012626.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:603220-604203:- | gene-YJR093C_S288C | rna-NM_001181750.1_S288C | cds-NP_012626.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:61789-62772:- | gene-YJR093C_SA1 | rna-NM_001181750.1_SA1 | cds-NP_012626.1_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:584539-585522:- | gene-YJR093C_ThermosaccDry | rna-NM_001181750.1_ThermosaccDry | cds-NP_012626.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:586682-587665:- | gene-YJR093C_VR1 | rna-NM_001181750.1_VR1 | cds-NP_012626.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:563924-564907:- | gene-YJR093C_ZTW1 | rna-NM_001181750.1_ZTW1 | cds-NP_012626.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:597343-598326:- | gene-YJR093C_Sparadoxus | rna-NM_001181750.1_Sparadoxus | cds-NP_012626.1_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |