Gene name: FCP1
Reference locus (S288C): YMR277W
Gene biotype: protein_coding
Description: Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): RPO21 (0.999); SUA7 (0.999); TFG1 (0.999); TFG2 (0.999); RPB4 (0.999); RPB7 (0.998); RPB2 (0.998); SPT5 (0.997); SSU72 (0.996); RPB11 (0.993); RPO26 (0.992); RPB5 (0.991); RTR1 (0.985); RPB3 (0.977); DST1 (0.974); SGV1 (0.973); ESS1 (0.972); KIN28 (0.971); SPT4 (0.965); CTK1 (0.957)
Homologues (species, bitscore): CTDP1 (Homo sapiens, 162.2); Ctdp1 (Mus musculus, 168.7); ctdp1 (Danio rerio, 167.2); ctdp1 (Xenopus tropicalis, 170.2); Fcp1 (Drosophila melanogaster, 211.1); fcp-1 (Caenorhabditis elegans, 191.4); CPL4 (Arabidopsis thaliana, 104.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:859337-861535:+ | gene-YMR277W_AKU4011 | rna-NM_001182784.1_AKU4011 | cds-NP_014004.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:92122-94320:- | gene-YMR277W_BG1 | rna-NM_001182784.1_BG1 | cds-NP_014004.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:804547-806745:+ | gene-YMR277W_Bruggeman | rna-NM_001182784.1_Bruggeman | cds-NP_014004.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:807833-810031:+ | gene-YMR277W_CAT1 | rna-NM_001182784.1_CAT1 | cds-NP_014004.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:791587-793785:+ | gene-YMR277W_CBS1585 | rna-NM_001182784.1_CBS1585 | cds-NP_014004.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:813892-816090:+ | gene-YMR277W_CBS436 | rna-NM_001182784.1_CBS436 | cds-NP_014004.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:903161-905359:+ | gene-YMR277W_CBS6412 | rna-NM_001182784.1_CBS6412 | cds-NP_014004.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:790708-792906:+ | gene-YMR277W_CBS6413 | rna-NM_001182784.1_CBS6413 | cds-NP_014004.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:814832-817030:+ | gene-YMR277W_CENPK1137D | rna-NM_001182784.1_CENPK1137D | cds-NP_014004.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:852027-854225:+ | gene-YMR277W_EthanolRed | rna-NM_001182784.1_EthanolRed | cds-NP_014004.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:798054-800252:+ | gene-YMR277W_FaliES1 | rna-NM_001182784.1_FaliES1 | cds-NP_014004.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:51491-53689:- | gene-YMR277W_JAY291 | rna-NM_001182784.1_JAY291 | cds-NP_014004.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:798372-800570:+ | gene-YMR277W_MUCL30387 | rna-NM_001182784.1_MUCL30387 | cds-NP_014004.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:807768-809966:+ | gene-YMR277W_MUCL30388 | rna-NM_001182784.1_MUCL30388 | cds-NP_014004.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:792675-794873:+ | gene-YMR277W_MUCL39482 | rna-NM_001182784.1_MUCL39482 | cds-NP_014004.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:800743-802941:+ | gene-YMR277W_MUCL42920 | rna-NM_001182784.1_MUCL42920 | cds-NP_014004.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:820210-822408:+ | gene-YMR277W_NCIM3186 | rna-NM_001182784.1_NCIM3186 | cds-NP_014004.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:792318-794516:+ | gene-YMR277W_NCYC1407 | rna-NM_001182784.1_NCYC1407 | cds-NP_014004.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:808113-810311:+ | gene-YMR277W_PE2H3 | rna-NM_001182784.1_PE2H3 | cds-NP_014004.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:804099-806297:+ | gene-YMR277W_PE2H4 | rna-NM_001182784.1_PE2H4 | cds-NP_014004.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:820256-822454:+ | gene-YMR277W_S288C | rna-NM_001182784.1_S288C | cds-NP_014004.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000114.1:12079-14277:+ | gene-YMR277W_SA1 | rna-NM_001182784.1_SA1 | cds-NP_014004.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:794223-796421:+ | gene-YMR277W_ThermosaccDry | rna-NM_001182784.1_ThermosaccDry | cds-NP_014004.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:807467-809665:+ | gene-YMR277W_VR1 | rna-NM_001182784.1_VR1 | cds-NP_014004.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:209452-211650:+ | gene-YMR277W_ZTW1 | rna-NM_001182784.1_ZTW1 | cds-NP_014004.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:812670-814868:+ | gene-YMR277W_Sparadoxus | rna-NM_001182784.1_Sparadoxus | cds-NP_014004.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |