Gene name: FCF2
Reference locus (S288C): YLR051C
Gene biotype: protein_coding
Description: rRNA-processing protein FCF2; Nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p; member of a transcriptionally co-regulated set of genes called the RRB regulon; essential gene
Top 10 interactors (score): SOF1 (0.999); FCF1 (0.999); UTP11 (0.999); UTP7 (0.998); LCP5 (0.998); SAS10 (0.998); NOP15 (0.997); UTP6 (0.997); IMP4 (0.997); RRT14 (0.996); UTP5 (0.996); BFR2 (0.996); BUD21 (0.996); UTP4 (0.995); ENP2 (0.994); UTP21 (0.994); UTP15 (0.994); KRR1 (0.993); PWP2 (0.993); FAF1 (0.993)
Homologues (species, bitscore): DNTTIP2 (Homo sapiens, 89.0); Dnttip2 (Mus musculus, 87.4); dnttip2 (Danio rerio, 85.5); DNTTIP2 (Xenopus tropicalis, 73.6); CG1142 (Drosophila melanogaster, 63.9); Y49F6B.2 (Caenorhabditis elegans, 78.2); AT5G30495 (Arabidopsis thaliana, 81.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:228807-229460:- | gene-YLR051C_AKU4011 | rna-NM_001181938.1_AKU4011 | cds-NP_013152.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:191941-192594:- | gene-YLR051C_BG1 | rna-NM_001181938.1_BG1 | cds-NP_013152.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:238715-239368:- | gene-YLR051C_Bruggeman | rna-NM_001181938.1_Bruggeman | cds-NP_013152.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:239036-239689:- | gene-YLR051C_CAT1 | rna-NM_001181938.1_CAT1 | cds-NP_013152.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:235943-236596:- | gene-YLR051C_CBS1585 | rna-NM_001181938.1_CBS1585 | cds-NP_013152.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:226568-227221:- | gene-YLR051C_CBS436 | rna-NM_001181938.1_CBS436 | cds-NP_013152.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:234354-235007:- | gene-YLR051C_CBS6412 | rna-NM_001181938.1_CBS6412 | cds-NP_013152.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:236208-236861:- | gene-YLR051C_CBS6413 | rna-NM_001181938.1_CBS6413 | cds-NP_013152.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:225602-226255:- | gene-YLR051C_CENPK1137D | rna-NM_001181938.1_CENPK1137D | cds-NP_013152.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:228322-228975:- | gene-YLR051C_EthanolRed | rna-NM_001181938.1_EthanolRed | cds-NP_013152.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:228210-228863:- | gene-YLR051C_FaliES1 | rna-NM_001181938.1_FaliES1 | cds-NP_013152.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:3140-3793:- | gene-YLR051C_JAY291 | rna-NM_001181938.1_JAY291 | cds-NP_013152.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:236068-236721:- | gene-YLR051C_MUCL30387 | rna-NM_001181938.1_MUCL30387 | cds-NP_013152.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:243731-244384:- | gene-YLR051C_MUCL30388 | rna-NM_001181938.1_MUCL30388 | cds-NP_013152.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:236438-237091:- | gene-YLR051C_MUCL39482 | rna-NM_001181938.1_MUCL39482 | cds-NP_013152.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:236344-236997:- | gene-YLR051C_MUCL42920 | rna-NM_001181938.1_MUCL42920 | cds-NP_013152.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:246298-246951:- | gene-YLR051C_NCIM3186 | rna-NM_001181938.1_NCIM3186 | cds-NP_013152.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:228499-229152:- | gene-YLR051C_NCYC1407 | rna-NM_001181938.1_NCYC1407 | cds-NP_013152.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:234366-235019:- | gene-YLR051C_PE2H3 | rna-NM_001181938.1_PE2H3 | cds-NP_013152.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:234107-234760:- | gene-YLR051C_PE2H4 | rna-NM_001181938.1_PE2H4 | cds-NP_013152.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:246324-246977:- | gene-YLR051C_S288C | rna-NM_001181938.1_S288C | cds-NP_013152.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:72199-72852:- | gene-YLR051C_SA1 | rna-NM_001181938.1_SA1 | cds-NP_013152.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:228395-229048:- | gene-YLR051C_ThermosaccDry | rna-NM_001181938.1_ThermosaccDry | cds-NP_013152.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:242060-242713:- | gene-YLR051C_VR1 | rna-NM_001181938.1_VR1 | cds-NP_013152.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:227755-228408:- | gene-YLR051C_ZTW1 | rna-NM_001181938.1_ZTW1 | cds-NP_013152.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:236668-237321:- | gene-YLR051C_Sparadoxus | rna-NM_001181938.1_Sparadoxus | cds-NP_013152.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |