Gene name: FCF1
Reference locus (S288C): YDR339C
Gene biotype: protein_coding
Description: rRNA-processing protein FCF1; Putative PINc domain nuclease; required for early cleavages of 35S pre-rRNA and maturation of 18S rRNA; component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; copurifies with Faf1p
Top 10 interactors (score): UTP30 (0.999); RRP9 (0.999); BMS1 (0.999); UTP11 (0.999); UTP6 (0.999); SAS10 (0.999); FCF2 (0.999); KRR1 (0.999); RRP7 (0.999); UTP14 (0.999); NOP9 (0.999); UTP20 (0.999); UTP7 (0.999); NOP14 (0.999); UTP10 (0.999); UTP22 (0.999); SOF1 (0.999); SNU13 (0.999); EMG1 (0.999); NOP58 (0.999)
Homologues (species, bitscore): FCF1 (Homo sapiens, 245.4); Fcf1 (Mus musculus, 241.1); FCF1 (Danio rerio, 204.1); fcf1 (Xenopus tropicalis, 240.7); Bka (Drosophila melanogaster, 227.3); F30A10.9 (Caenorhabditis elegans, 201.1); AT2G46230 (Arabidopsis thaliana, 239.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1095989-1096558:- | gene-YDR339C_AKU4011 | rna-NM_001180647.1_AKU4011 | cds-NP_010626.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:35004-35573:+ | gene-YDR339C_BG1 | rna-NM_001180647.1_BG1 | cds-NP_010626.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1123535-1124104:- | gene-YDR339C_Bruggeman | rna-NM_001180647.1_Bruggeman | cds-NP_010626.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1110277-1110846:- | gene-YDR339C_CAT1 | rna-NM_001180647.1_CAT1 | cds-NP_010626.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1090433-1091002:- | gene-YDR339C_CBS1585 | rna-NM_001180647.1_CBS1585 | cds-NP_010626.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1108818-1109387:- | gene-YDR339C_CBS436 | rna-NM_001180647.1_CBS436 | cds-NP_010626.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1087121-1087690:- | gene-YDR339C_CBS6412 | rna-NM_001180647.1_CBS6412 | cds-NP_010626.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1108352-1108921:- | gene-YDR339C_CBS6413 | rna-NM_001180647.1_CBS6413 | cds-NP_010626.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1148602-1149171:- | gene-YDR339C_CENPK1137D | rna-NM_001180647.1_CENPK1137D | cds-NP_010626.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:271529-272098:- | gene-YDR339C_EthanolRed | rna-NM_001180647.1_EthanolRed | cds-NP_010626.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1102744-1103313:- | gene-YDR339C_FaliES1 | rna-NM_001180647.1_FaliES1 | cds-NP_010626.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:55253-55822:- | gene-YDR339C_JAY291 | rna-NM_001180647.1_JAY291 | cds-NP_010626.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1108779-1109348:- | gene-YDR339C_MUCL30387 | rna-NM_001180647.1_MUCL30387 | cds-NP_010626.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1097736-1098305:- | gene-YDR339C_MUCL30388 | rna-NM_001180647.1_MUCL30388 | cds-NP_010626.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1082240-1082809:- | gene-YDR339C_MUCL39482 | rna-NM_001180647.1_MUCL39482 | cds-NP_010626.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1029312-1029881:- | gene-YDR339C_MUCL42920 | rna-NM_001180647.1_MUCL42920 | cds-NP_010626.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1149874-1150443:- | gene-YDR339C_NCIM3186 | rna-NM_001180647.1_NCIM3186 | cds-NP_010626.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1095531-1096100:- | gene-YDR339C_NCYC1407 | rna-NM_001180647.1_NCYC1407 | cds-NP_010626.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1106535-1107104:- | gene-YDR339C_PE2H3 | rna-NM_001180647.1_PE2H3 | cds-NP_010626.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1112120-1112689:- | gene-YDR339C_PE2H4 | rna-NM_001180647.1_PE2H4 | cds-NP_010626.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1149951-1150520:- | gene-YDR339C_S288C | rna-NM_001180647.1_S288C | cds-NP_010626.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:120757-121326:- | gene-YDR339C_SA1 | rna-NM_001180647.1_SA1 | cds-NP_010626.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1107017-1107586:- | gene-YDR339C_ThermosaccDry | rna-NM_001180647.1_ThermosaccDry | cds-NP_010626.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1122930-1123499:- | gene-YDR339C_VR1 | rna-NM_001180647.1_VR1 | cds-NP_010626.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:151126-151695:- | gene-YDR339C_ZTW1 | rna-NM_001180647.1_ZTW1 | cds-NP_010626.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1102481-1103050:- | gene-YDR339C_Sparadoxus | rna-NM_001180647.1_Sparadoxus | cds-NP_010626.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |