Gene name: FAA2
Reference locus (S288C): YER015W
Gene biotype: protein_coding
Description: Long-chain-fatty-acid--CoA ligase 2; Medium chain fatty acyl-CoA synthetase; activates imported fatty acids; accepts a wide range of fatty acid chain lengths with a preference for medium chains, C9:0-C13:0; localized to the peroxisome; comparative analysis suggests that a mitochondrially targeted form may result from translation starting at a non-canonical codon upstream of the annotated start codon
Top 10 interactors (score): POX1 (0.999); FOX2 (0.99); PEX11 (0.987); PXA1 (0.983); SPS19 (0.979); PXA2 (0.975); FAS2 (0.965); FAS1 (0.961); CAT2 (0.961); POT1 (0.932); CRC1 (0.923); PEX3 (0.918); FAT1 (0.91); ANT1 (0.9); ECI1 (0.899); PCS60 (0.89); DGA1 (0.869); YJU3 (0.862); PEX5 (0.802); CEM1 (0.8)
Homologues (species, bitscore): ACSL1 (Homo sapiens, 325.5); Acsl1 (Mus musculus, 324.3); acsl5 (Danio rerio, 327.0); acsl1 (Xenopus tropicalis, 328.9); CG3961 (Drosophila melanogaster, 318.5); acs-13 (Caenorhabditis elegans, 325.1); LACS7 (Arabidopsis thaliana, 309.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:178586-180820:+ | gene-YER015W_AKU4011 | rna-NM_001178906.3_AKU4011 | cds-NP_010931.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:245279-247513:- | gene-YER015W_BG1 | rna-NM_001178906.3_BG1 | cds-NP_010931.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:186445-188679:+ | gene-YER015W_Bruggeman | rna-NM_001178906.3_Bruggeman | cds-NP_010931.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:181087-183321:+ | gene-YER015W_CAT1 | rna-NM_001178906.3_CAT1 | cds-NP_010931.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:178509-180743:+ | gene-YER015W_CBS1585 | rna-NM_001178906.3_CBS1585 | cds-NP_010931.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:180083-182317:+ | gene-YER015W_CBS436 | rna-NM_001178906.3_CBS436 | cds-NP_010931.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:178753-180987:+ | gene-YER015W_CBS6412 | rna-NM_001178906.3_CBS6412 | cds-NP_010931.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:183539-185773:+ | gene-YER015W_CBS6413 | rna-NM_001178906.3_CBS6413 | cds-NP_010931.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:182403-184637:+ | gene-YER015W_CENPK1137D | rna-NM_001178906.3_CENPK1137D | cds-NP_010931.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:179212-181446:+ | gene-YER015W_EthanolRed | rna-NM_001178906.3_EthanolRed | cds-NP_010931.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:179472-181706:+ | gene-YER015W_FaliES1 | rna-NM_001178906.3_FaliES1 | cds-NP_010931.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:46098-48332:+ | gene-YER015W_JAY291 | rna-NM_001178906.3_JAY291 | cds-NP_010931.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:182638-184872:+ | gene-YER015W_MUCL30387 | rna-NM_001178906.3_MUCL30387 | cds-NP_010931.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:178913-181147:+ | gene-YER015W_MUCL30388 | rna-NM_001178906.3_MUCL30388 | cds-NP_010931.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:177552-179786:+ | gene-YER015W_MUCL39482 | rna-NM_001178906.3_MUCL39482 | cds-NP_010931.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:183669-185903:+ | gene-YER015W_MUCL42920 | rna-NM_001178906.3_MUCL42920 | cds-NP_010931.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:184540-186774:+ | gene-YER015W_NCIM3186 | rna-NM_001178906.3_NCIM3186 | cds-NP_010931.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:182624-184858:+ | gene-YER015W_NCYC1407 | rna-NM_001178906.3_NCYC1407 | cds-NP_010931.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:186925-189159:+ | gene-YER015W_PE2H3 | rna-NM_001178906.3_PE2H3 | cds-NP_010931.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:182840-185074:+ | gene-YER015W_PE2H4 | rna-NM_001178906.3_PE2H4 | cds-NP_010931.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:184541-186775:+ | gene-YER015W_S288C | rna-NM_001178906.3_S288C | cds-NP_010931.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:56895-59129:- | gene-YER015W_SA1 | rna-NM_001178906.3_SA1 | cds-NP_010931.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:180243-182477:+ | gene-YER015W_ThermosaccDry | rna-NM_001178906.3_ThermosaccDry | cds-NP_010931.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:178984-181218:+ | gene-YER015W_VR1 | rna-NM_001178906.3_VR1 | cds-NP_010931.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:177455-179689:+ | gene-YER015W_ZTW1 | rna-NM_001178906.3_ZTW1 | cds-NP_010931.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:182062-184296:+ | gene-YER015W_Sparadoxus | rna-NM_001178906.3_Sparadoxus | cds-NP_010931.3_Sparadoxus | 89.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |