Gene name: ESF2
Reference locus (S288C): YNR054C
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein ESF2; Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase activity of Dbp8; involved in assembly of the small subunit (SSU) processome
Top 10 interactors (score): ENP1 (0.999); HAS1 (0.999); DBP8 (0.999); KRR1 (0.999); HCA4 (0.999); DIP2 (0.999); ESF1 (0.999); PRP43 (0.999); RRP36 (0.998); LCP5 (0.998); UTP14 (0.998); UTP6 (0.998); NOP14 (0.996); PWP2 (0.995); UTP25 (0.99); RPF2 (0.989); EBP2 (0.988); IMP4 (0.985); ROK1 (0.984); KRI1 (0.984)
Homologues (species, bitscore): ABT1 (Homo sapiens, 107.1); Abt1 (Mus musculus, 117.1); abt1 (Danio rerio, 120.2); abt1 (Xenopus tropicalis, 128.3); CG32708 (Drosophila melanogaster, 107.8); F57B10.8 (Caenorhabditis elegans, 103.6); AT3G56510 (Arabidopsis thaliana, 136.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:227161-228111:+ | gene-YNR054C_AKU4011 | rna-NM_001183231.1_AKU4011 | cds-NP_014452.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:614941-615891:- | gene-YNR054C_BG1 | rna-NM_001183231.1_BG1 | cds-NP_014452.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:724661-725611:- | gene-YNR054C_Bruggeman | rna-NM_001183231.1_Bruggeman | cds-NP_014452.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:758692-759642:- | gene-YNR054C_CAT1 | rna-NM_001183231.1_CAT1 | cds-NP_014452.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:712928-713878:- | gene-YNR054C_CBS1585 | rna-NM_001183231.1_CBS1585 | cds-NP_014452.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:774432-775382:- | gene-YNR054C_CBS436 | rna-NM_001183231.1_CBS436 | cds-NP_014452.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:701910-702860:- | gene-YNR054C_CBS6412 | rna-NM_001183231.1_CBS6412 | cds-NP_014452.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:703591-704541:- | gene-YNR054C_CBS6413 | rna-NM_001183231.1_CBS6413 | cds-NP_014452.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:717072-718022:- | gene-YNR054C_CENPK1137D | rna-NM_001183231.1_CENPK1137D | cds-NP_014452.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:708569-709519:- | gene-YNR054C_EthanolRed | rna-NM_001183231.1_EthanolRed | cds-NP_014452.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:699761-700711:- | gene-YNR054C_FaliES1 | rna-NM_001183231.1_FaliES1 | cds-NP_014452.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:1952-2902:+ | gene-YNR054C_JAY291 | rna-NM_001183231.1_JAY291 | cds-NP_014452.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:722589-723539:- | gene-YNR054C_MUCL30387 | rna-NM_001183231.1_MUCL30387 | cds-NP_014452.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:763646-764596:- | gene-YNR054C_MUCL30388 | rna-NM_001183231.1_MUCL30388 | cds-NP_014452.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:704394-705344:- | gene-YNR054C_MUCL39482 | rna-NM_001183231.1_MUCL39482 | cds-NP_014452.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:709061-710011:- | gene-YNR054C_MUCL42920 | rna-NM_001183231.1_MUCL42920 | cds-NP_014452.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:723325-724275:- | gene-YNR054C_NCIM3186 | rna-NM_001183231.1_NCIM3186 | cds-NP_014452.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:706910-707860:- | gene-YNR054C_NCYC1407 | rna-NM_001183231.1_NCYC1407 | cds-NP_014452.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:707776-708726:- | gene-YNR054C_PE2H3 | rna-NM_001183231.1_PE2H3 | cds-NP_014452.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:709178-710128:- | gene-YNR054C_PE2H4 | rna-NM_001183231.1_PE2H4 | cds-NP_014452.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:723356-724306:- | gene-YNR054C_S288C | rna-NM_001183231.1_S288C | cds-NP_014452.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:2018-2968:+ | gene-YNR054C_SA1 | rna-NM_001183231.1_SA1 | cds-NP_014452.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:700104-701054:- | gene-YNR054C_ThermosaccDry | rna-NM_001183231.1_ThermosaccDry | cds-NP_014452.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:742238-743188:- | gene-YNR054C_VR1 | rna-NM_001183231.1_VR1 | cds-NP_014452.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:609870-610820:- | gene-YNR054C_ZTW1 | rna-NM_001183231.1_ZTW1 | cds-NP_014452.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:714317-715267:- | gene-YNR054C_Sparadoxus | rna-NM_001183231.1_Sparadoxus | cds-NP_014452.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |