Gene name: ESF1
Reference locus (S288C): YDR365C
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein ESF1; Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels
Top 10 interactors (score): RRP3 (0.999); HCA4 (0.999); CKA1 (0.999); UTP22 (0.999); ESF2 (0.999); SAS10 (0.999); BFR2 (0.997); KRE33 (0.996); HAS1 (0.995); UTP6 (0.995); UTP18 (0.994); KRI1 (0.994); ENP2 (0.994); NOP4 (0.991); SDA1 (0.99); UTP14 (0.988); MRD1 (0.988); RRP12 (0.987); NOP58 (0.985); CBF5 (0.985)
Homologues (species, bitscore): ESF1 (Homo sapiens, 266.9); Esf1 (Mus musculus, 250.0); esf1 (Danio rerio, 263.5); esf1 (Xenopus tropicalis, 256.1); CG11417 (Drosophila melanogaster, 272.3); F58B3.4 (Caenorhabditis elegans, 142.1); AT3G01160 (Arabidopsis thaliana, 246.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1150560-1152446:- | gene-YDR365C_AKU4011 | rna-NM_001180673.1_AKU4011 | cds-NP_010653.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:29112-30998:- | gene-YDR365C_BG1 | rna-NM_001180673.1_BG1 | cds-NP_010653.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1181213-1183099:- | gene-YDR365C_Bruggeman | rna-NM_001180673.1_Bruggeman | cds-NP_010653.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1159806-1161692:- | gene-YDR365C_CAT1 | rna-NM_001180673.1_CAT1 | cds-NP_010653.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1145277-1147163:- | gene-YDR365C_CBS1585 | rna-NM_001180673.1_CBS1585 | cds-NP_010653.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1163861-1165747:- | gene-YDR365C_CBS436 | rna-NM_001180673.1_CBS436 | cds-NP_010653.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1141537-1143423:- | gene-YDR365C_CBS6412 | rna-NM_001180673.1_CBS6412 | cds-NP_010653.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1163427-1165313:- | gene-YDR365C_CBS6413 | rna-NM_001180673.1_CBS6413 | cds-NP_010653.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1203142-1205028:- | gene-YDR365C_CENPK1137D | rna-NM_001180673.1_CENPK1137D | cds-NP_010653.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1154965-1156851:- | gene-YDR365C_EthanolRed | rna-NM_001180673.1_EthanolRed | cds-NP_010653.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1158248-1160134:- | gene-YDR365C_FaliES1 | rna-NM_001180673.1_FaliES1 | cds-NP_010653.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:30939-32825:+ | gene-YDR365C_JAY291 | rna-NM_001180673.1_JAY291 | cds-NP_010653.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1164513-1166399:- | gene-YDR365C_MUCL30387 | rna-NM_001180673.1_MUCL30387 | cds-NP_010653.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1147118-1149004:- | gene-YDR365C_MUCL30388 | rna-NM_001180673.1_MUCL30388 | cds-NP_010653.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1136811-1138697:- | gene-YDR365C_MUCL39482 | rna-NM_001180673.1_MUCL39482 | cds-NP_010653.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1079245-1081131:- | gene-YDR365C_MUCL42920 | rna-NM_001180673.1_MUCL42920 | cds-NP_010653.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1204420-1206306:- | gene-YDR365C_NCIM3186 | rna-NM_001180673.1_NCIM3186 | cds-NP_010653.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1150482-1152368:- | gene-YDR365C_NCYC1407 | rna-NM_001180673.1_NCYC1407 | cds-NP_010653.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1160915-1162801:- | gene-YDR365C_PE2H3 | rna-NM_001180673.1_PE2H3 | cds-NP_010653.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1166500-1168386:- | gene-YDR365C_PE2H4 | rna-NM_001180673.1_PE2H4 | cds-NP_010653.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1204497-1206383:- | gene-YDR365C_S288C | rna-NM_001180673.1_S288C | cds-NP_010653.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:29193-31079:- | gene-YDR365C_SA1 | rna-NM_001180673.1_SA1 | cds-NP_010653.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1162529-1164415:- | gene-YDR365C_ThermosaccDry | rna-NM_001180673.1_ThermosaccDry | cds-NP_010653.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:589879-591765:- | gene-YDR365C_VR1 | rna-NM_001180673.1_VR1 | cds-NP_010653.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:205360-207246:- | gene-YDR365C_ZTW1 | rna-NM_001180673.1_ZTW1 | cds-NP_010653.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1157005-1158894:- | gene-YDR365C_Sparadoxus | rna-NM_001180673.1_Sparadoxus | cds-NP_010653.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |