ERD2 (YBL040C)


Gene profile

Gene name: ERD2
Reference locus (S288C): YBL040C
Gene biotype: protein_coding

Description: ER lumen protein-retaining receptor; HDEL receptor; an integral membrane protein that binds to the HDEL motif in proteins destined for retention in the endoplasmic reticulum; has a role in maintenance of normal levels of ER-resident proteins

Top 10 interactors (score): KAR2 (0.99); CNE1 (0.968); RER1 (0.967); WBP1 (0.965); PDI1 (0.964); COP1 (0.963); SFB3 (0.962); ERV29 (0.96); RET3 (0.95); SEC61 (0.944); ERV25 (0.943); GLO3 (0.943); BET1 (0.938); SPS18 (0.936); KEX2 (0.935); OST3 (0.933); SEC23 (0.92); LHS1 (0.92); SEC27 (0.916); ERD1 (0.912)

Homologues (species, bitscore): KDELR1 (Homo sapiens, 206.8); Kdelr1 (Mus musculus, 206.5); kdelr2a (Danio rerio, 204.9); kdelr2 (Xenopus tropicalis, 212.2); KdelR (Drosophila melanogaster, 213.0); C28H8.4 (Caenorhabditis elegans, 192.6); ERD2A (Arabidopsis thaliana, 188.0)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:135721-136477:- gene-YBL040C_AKU4011 rna-NM_001178280.1_AKU4011 cds-NP_009513.1_AKU4011 99.5 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000179.1:126552-127308:- gene-YBL040C_BG1 rna-NM_001178280.1_BG1 cds-NP_009513.1_BG1 99.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:136322-137078:- gene-YBL040C_Bruggeman rna-NM_001178280.1_Bruggeman cds-NP_009513.1_Bruggeman 99.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:138949-139705:- gene-YBL040C_CAT1 rna-NM_001178280.1_CAT1 cds-NP_009513.1_CAT1 99.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:128261-129017:- gene-YBL040C_CBS1585 rna-NM_001178280.1_CBS1585 cds-NP_009513.1_CBS1585 99.5 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005344.1:136783-137539:- gene-YBL040C_CBS436 rna-NM_001178280.1_CBS436 cds-NP_009513.1_CBS436 99.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:227015-227771:- gene-YBL040C_CBS6412 rna-NM_001178280.1_CBS6412 cds-NP_009513.1_CBS6412 99.5 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:133833-134589:- gene-YBL040C_CBS6413 rna-NM_001178280.1_CBS6413 cds-NP_009513.1_CBS6413 99.5 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:135869-136625:- gene-YBL040C_CENPK1137D rna-NM_001178280.1_CENPK1137D cds-NP_009513.1_CENPK1137D 98.9 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:149685-150441:- gene-YBL040C_EthanolRed rna-NM_001178280.1_EthanolRed cds-NP_009513.1_EthanolRed 99.5 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:150535-151291:- gene-YBL040C_FaliES1 rna-NM_001178280.1_FaliES1 cds-NP_009513.1_FaliES1 99.5 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000072.1:53176-53932:- gene-YBL040C_JAY291 rna-NM_001178280.1_JAY291 cds-NP_009513.1_JAY291 99.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:135694-136450:- gene-YBL040C_MUCL30387 rna-NM_001178280.1_MUCL30387 cds-NP_009513.1_MUCL30387 99.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:136974-137730:- gene-YBL040C_MUCL30388 rna-NM_001178280.1_MUCL30388 cds-NP_009513.1_MUCL30388 99.5 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:128436-129192:- gene-YBL040C_MUCL39482 rna-NM_001178280.1_MUCL39482 cds-NP_009513.1_MUCL39482 99.5 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:135284-136040:- gene-YBL040C_MUCL42920 rna-NM_001178280.1_MUCL42920 cds-NP_009513.1_MUCL42920 99.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:141909-142665:- gene-YBL040C_NCIM3186 rna-NM_001178280.1_NCIM3186 cds-NP_009513.1_NCIM3186 99.2 100.0 Verified 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:129574-130330:- gene-YBL040C_NCYC1407 rna-NM_001178280.1_NCYC1407 cds-NP_009513.1_NCYC1407 99.5 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:135853-136609:- gene-YBL040C_PE2H3 rna-NM_001178280.1_PE2H3 cds-NP_009513.1_PE2H3 99.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:133497-134253:- gene-YBL040C_PE2H4 rna-NM_001178280.1_PE2H4 cds-NP_009513.1_PE2H4 99.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:142112-142868:- gene-YBL040C_S288C rna-NM_001178280.1_S288C cds-NP_009513.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000051.1:26704-27460:- gene-YBL040C_SA1 rna-NM_001178280.1_SA1 cds-NP_009513.1_SA1 99.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:150499-151255:- gene-YBL040C_ThermosaccDry rna-NM_001178280.1_ThermosaccDry cds-NP_009513.1_ThermosaccDry 99.5 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:132682-133438:- gene-YBL040C_VR1 rna-NM_001178280.1_VR1 cds-NP_009513.1_VR1 99.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:127201-127957:- gene-YBL040C_ZTW1 rna-NM_001178280.1_ZTW1 cds-NP_009513.1_ZTW1 99.5 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:162084-162839:- gene-YBL040C_Sparadoxus rna-NM_001178280.1_Sparadoxus cds-NP_009513.1_Sparadoxus 92.2 100.0 Verified 1 1 1 False True False False False

Additional files