Gene name: ERD2
Reference locus (S288C): YBL040C
Gene biotype: protein_coding
Description: ER lumen protein-retaining receptor; HDEL receptor; an integral membrane protein that binds to the HDEL motif in proteins destined for retention in the endoplasmic reticulum; has a role in maintenance of normal levels of ER-resident proteins
Top 10 interactors (score): KAR2 (0.99); CNE1 (0.968); RER1 (0.967); WBP1 (0.965); PDI1 (0.964); COP1 (0.963); SFB3 (0.962); ERV29 (0.96); RET3 (0.95); SEC61 (0.944); ERV25 (0.943); GLO3 (0.943); BET1 (0.938); SPS18 (0.936); KEX2 (0.935); OST3 (0.933); SEC23 (0.92); LHS1 (0.92); SEC27 (0.916); ERD1 (0.912)
Homologues (species, bitscore): KDELR1 (Homo sapiens, 206.8); Kdelr1 (Mus musculus, 206.5); kdelr2a (Danio rerio, 204.9); kdelr2 (Xenopus tropicalis, 212.2); KdelR (Drosophila melanogaster, 213.0); C28H8.4 (Caenorhabditis elegans, 192.6); ERD2A (Arabidopsis thaliana, 188.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:135721-136477:- | gene-YBL040C_AKU4011 | rna-NM_001178280.1_AKU4011 | cds-NP_009513.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:126552-127308:- | gene-YBL040C_BG1 | rna-NM_001178280.1_BG1 | cds-NP_009513.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:136322-137078:- | gene-YBL040C_Bruggeman | rna-NM_001178280.1_Bruggeman | cds-NP_009513.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:138949-139705:- | gene-YBL040C_CAT1 | rna-NM_001178280.1_CAT1 | cds-NP_009513.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:128261-129017:- | gene-YBL040C_CBS1585 | rna-NM_001178280.1_CBS1585 | cds-NP_009513.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:136783-137539:- | gene-YBL040C_CBS436 | rna-NM_001178280.1_CBS436 | cds-NP_009513.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:227015-227771:- | gene-YBL040C_CBS6412 | rna-NM_001178280.1_CBS6412 | cds-NP_009513.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:133833-134589:- | gene-YBL040C_CBS6413 | rna-NM_001178280.1_CBS6413 | cds-NP_009513.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:135869-136625:- | gene-YBL040C_CENPK1137D | rna-NM_001178280.1_CENPK1137D | cds-NP_009513.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:149685-150441:- | gene-YBL040C_EthanolRed | rna-NM_001178280.1_EthanolRed | cds-NP_009513.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:150535-151291:- | gene-YBL040C_FaliES1 | rna-NM_001178280.1_FaliES1 | cds-NP_009513.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:53176-53932:- | gene-YBL040C_JAY291 | rna-NM_001178280.1_JAY291 | cds-NP_009513.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:135694-136450:- | gene-YBL040C_MUCL30387 | rna-NM_001178280.1_MUCL30387 | cds-NP_009513.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:136974-137730:- | gene-YBL040C_MUCL30388 | rna-NM_001178280.1_MUCL30388 | cds-NP_009513.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:128436-129192:- | gene-YBL040C_MUCL39482 | rna-NM_001178280.1_MUCL39482 | cds-NP_009513.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:135284-136040:- | gene-YBL040C_MUCL42920 | rna-NM_001178280.1_MUCL42920 | cds-NP_009513.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:141909-142665:- | gene-YBL040C_NCIM3186 | rna-NM_001178280.1_NCIM3186 | cds-NP_009513.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:129574-130330:- | gene-YBL040C_NCYC1407 | rna-NM_001178280.1_NCYC1407 | cds-NP_009513.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:135853-136609:- | gene-YBL040C_PE2H3 | rna-NM_001178280.1_PE2H3 | cds-NP_009513.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:133497-134253:- | gene-YBL040C_PE2H4 | rna-NM_001178280.1_PE2H4 | cds-NP_009513.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:142112-142868:- | gene-YBL040C_S288C | rna-NM_001178280.1_S288C | cds-NP_009513.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:26704-27460:- | gene-YBL040C_SA1 | rna-NM_001178280.1_SA1 | cds-NP_009513.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:150499-151255:- | gene-YBL040C_ThermosaccDry | rna-NM_001178280.1_ThermosaccDry | cds-NP_009513.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:132682-133438:- | gene-YBL040C_VR1 | rna-NM_001178280.1_VR1 | cds-NP_009513.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:127201-127957:- | gene-YBL040C_ZTW1 | rna-NM_001178280.1_ZTW1 | cds-NP_009513.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:162084-162839:- | gene-YBL040C_Sparadoxus | rna-NM_001178280.1_Sparadoxus | cds-NP_009513.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |