Gene name: ERB1
Reference locus (S288C): YMR049C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein ERB1; Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1
Top 10 interactors (score): UTP21 (0.999); NMD3 (0.999); UTP10 (0.999); DBP10 (0.999); NOP14 (0.999); ENP1 (0.999); BRX1 (0.999); CBF5 (0.999); MAK16 (0.999); NOC2 (0.999); BMS1 (0.999); RRP5 (0.999); PUF6 (0.999); UTP4 (0.999); NOC4 (0.999); ECM16 (0.999); RSA4 (0.999); MAK21 (0.999); NOP4 (0.999); CIC1 (0.999)
Homologues (species, bitscore): BOP1 (Homo sapiens, 555.1); Bop1 (Mus musculus, 547.4); bop1 (Danio rerio, 568.5); pafah1b1 (Xenopus tropicalis, 53.9); CG5033 (Drosophila melanogaster, 557.8); Y48B6A.1 (Caenorhabditis elegans, 489.6); AT2G40360 (Arabidopsis thaliana, 472.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:411755-414178:- | gene-YMR049C_AKU4011 | rna-NM_001182546.1_AKU4011 | cds-NP_013764.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:128589-131012:+ | gene-YMR049C_BG1 | rna-NM_001182546.1_BG1 | cds-NP_013764.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:352977-355400:- | gene-YMR049C_Bruggeman | rna-NM_001182546.1_Bruggeman | cds-NP_013764.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:354253-356676:- | gene-YMR049C_CAT1 | rna-NM_001182546.1_CAT1 | cds-NP_013764.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:344697-347120:- | gene-YMR049C_CBS1585 | rna-NM_001182546.1_CBS1585 | cds-NP_013764.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:350263-352686:- | gene-YMR049C_CBS436 | rna-NM_001182546.1_CBS436 | cds-NP_013764.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:458098-460521:- | gene-YMR049C_CBS6412 | rna-NM_001182546.1_CBS6412 | cds-NP_013764.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:343952-346375:- | gene-YMR049C_CBS6413 | rna-NM_001182546.1_CBS6413 | cds-NP_013764.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:356895-359318:- | gene-YMR049C_CENPK1137D | rna-NM_001182546.1_CENPK1137D | cds-NP_013764.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:344542-346965:- | gene-YMR049C_EthanolRed | rna-NM_001182546.1_EthanolRed | cds-NP_013764.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:347712-350135:- | gene-YMR049C_FaliES1 | rna-NM_001182546.1_FaliES1 | cds-NP_013764.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:86799-89222:+ | gene-YMR049C_JAY291 | rna-NM_001182546.1_JAY291 | cds-NP_013764.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:349677-352100:- | gene-YMR049C_MUCL30387 | rna-NM_001182546.1_MUCL30387 | cds-NP_013764.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:354332-356755:- | gene-YMR049C_MUCL30388 | rna-NM_001182546.1_MUCL30388 | cds-NP_013764.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:344985-347408:- | gene-YMR049C_MUCL39482 | rna-NM_001182546.1_MUCL39482 | cds-NP_013764.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:350818-353241:- | gene-YMR049C_MUCL42920 | rna-NM_001182546.1_MUCL42920 | cds-NP_013764.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:368048-370471:- | gene-YMR049C_NCIM3186 | rna-NM_001182546.1_NCIM3186 | cds-NP_013764.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:344896-347319:- | gene-YMR049C_NCYC1407 | rna-NM_001182546.1_NCYC1407 | cds-NP_013764.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:350853-353276:- | gene-YMR049C_PE2H3 | rna-NM_001182546.1_PE2H3 | cds-NP_013764.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:356948-359371:- | gene-YMR049C_PE2H4 | rna-NM_001182546.1_PE2H4 | cds-NP_013764.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:368094-370517:- | gene-YMR049C_S288C | rna-NM_001182546.1_S288C | cds-NP_013764.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:173662-176085:+ | gene-YMR049C_SA1 | rna-NM_001182546.1_SA1 | cds-NP_013764.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:345518-347941:- | gene-YMR049C_ThermosaccDry | rna-NM_001182546.1_ThermosaccDry | cds-NP_013764.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:349510-351933:- | gene-YMR049C_VR1 | rna-NM_001182546.1_VR1 | cds-NP_013764.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:323810-326233:- | gene-YMR049C_ZTW1 | rna-NM_001182546.1_ZTW1 | cds-NP_013764.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:358024-360444:- | gene-YMR049C_Sparadoxus | rna-NM_001182546.1_Sparadoxus | cds-NP_013764.1_Sparadoxus | 91.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |