Gene name: EMP47
Reference locus (S288C): YFL048C
Gene biotype: protein_coding
Description: Lectin, mannose-binding 1; Protein EMP47; Integral membrane component of ER-derived COPII-coated vesicles; functionS in ER to Golgi transport; EMP47 has a paralog, EMP46, that arose from the whole genome duplication
Top 10 interactors (score): EMP46 (0.999); SEC23 (0.909); SEC21 (0.839); RER1 (0.83); SSP120 (0.823); SEC22 (0.818); EMP24 (0.814); COP1 (0.789); ERV46 (0.788); ERV14 (0.779); ERV29 (0.776); ERV25 (0.765); SEC27 (0.76); SED5 (0.75); ERP2 (0.749); BET1 (0.748); SEC12 (0.746); GAS1 (0.741); ERV41 (0.72); ARF1 (0.716)
Homologues (species, bitscore): ergic53 (Drosophila melanogaster, 70.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:35181-36518:- | gene-YFL048C_AKU4011 | rna-NM_001179919.1_AKU4011 | cds-NP_116606.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000182.1:33275-34612:+ | gene-YFL048C_BG1 | rna-NM_001179919.1_BG1 | cds-NP_116606.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:33559-34896:- | gene-YFL048C_Bruggeman | rna-NM_001179919.1_Bruggeman | cds-NP_116606.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:38947-40284:- | gene-YFL048C_CAT1 | rna-NM_001179919.1_CAT1 | cds-NP_116606.1_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:35858-37195:- | gene-YFL048C_CBS1585 | rna-NM_001179919.1_CBS1585 | cds-NP_116606.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:9492-10829:- | gene-YFL048C_CBS436 | rna-NM_001179919.1_CBS436 | cds-NP_116606.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:36098-37435:- | gene-YFL048C_CBS6412 | rna-NM_001179919.1_CBS6412 | cds-NP_116606.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:38259-39596:- | gene-YFL048C_CBS6413 | rna-NM_001179919.1_CBS6413 | cds-NP_116606.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:35169-36506:- | gene-YFL048C_CENPK1137D | rna-NM_001179919.1_CENPK1137D | cds-NP_116606.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:34525-35862:- | gene-YFL048C_EthanolRed | rna-NM_001179919.1_EthanolRed | cds-NP_116606.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:35733-37070:- | gene-YFL048C_FaliES1 | rna-NM_001179919.1_FaliES1 | cds-NP_116606.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:44189-45526:- | gene-YFL048C_JAY291 | rna-NM_001179919.1_JAY291 | cds-NP_116606.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:36148-37485:- | gene-YFL048C_MUCL30387 | rna-NM_001179919.1_MUCL30387 | cds-NP_116606.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:33172-34509:- | gene-YFL048C_MUCL30388 | rna-NM_001179919.1_MUCL30388 | cds-NP_116606.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:34374-35711:- | gene-YFL048C_MUCL39482 | rna-NM_001179919.1_MUCL39482 | cds-NP_116606.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:32077-33414:- | gene-YFL048C_MUCL42920 | rna-NM_001179919.1_MUCL42920 | cds-NP_116606.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:38842-40179:- | gene-YFL048C_NCIM3186 | rna-NM_001179919.1_NCIM3186 | cds-NP_116606.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:35451-36788:- | gene-YFL048C_NCYC1407 | rna-NM_001179919.1_NCYC1407 | cds-NP_116606.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:55343-56680:- | gene-YFL048C_PE2H3 | rna-NM_001179919.1_PE2H3 | cds-NP_116606.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:54894-56231:- | gene-YFL048C_PE2H4 | rna-NM_001179919.1_PE2H4 | cds-NP_116606.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:38843-40180:- | gene-YFL048C_S288C | rna-NM_001179919.1_S288C | cds-NP_116606.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:295452-296789:+ | gene-YFL048C_SA1 | rna-NM_001179919.1_SA1 | cds-NP_116606.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:34921-36258:- | gene-YFL048C_ThermosaccDry | rna-NM_001179919.1_ThermosaccDry | cds-NP_116606.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:43215-44552:- | gene-YFL048C_VR1 | rna-NM_001179919.1_VR1 | cds-NP_116606.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000012.1:20217-21554:- | gene-YFL048C_ZTW1 | rna-NM_001179919.1_ZTW1 | cds-NP_116606.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:59221-60558:- | gene-YFL048C_Sparadoxus | rna-NM_001179919.1_Sparadoxus | cds-NP_116606.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |