Gene name: EMP46
Reference locus (S288C): YLR080W
Gene biotype: protein_coding
Description: Lectin, mannose-binding 1; Protein EMP46; Integral membrane component of ER-derived COPII-coated vesicles; functions in ER to Golgi transport; EMP46 has a paralog, EMP47, that arose from the whole genome duplication; Belongs to the EMP46/EMP47 family
Top 10 interactors (score): EMP47 (0.999); SSP120 (0.793); SRL2 (0.714); SVP26 (0.713); ERV14 (0.695); ERV29 (0.684); SEC24 (0.656); EMP70 (0.574); ERV15 (0.57); PGA3 (0.568); SEC23 (0.524); ERV46 (0.516); GAL2 (0.499); COX14 (0.482); MSC1 (0.481); ROT2 (0.475); SFB2 (0.454); VAC7 (0.45); CIN1 (0.45); YCR047W-A (0.45)
Homologues (species, bitscore): ergic53 (Drosophila melanogaster, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:270387-271721:+ | gene-YLR080W_AKU4011 | rna-NM_001181967.1_AKU4011 | cds-NP_013181.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:233523-234857:+ | gene-YLR080W_BG1 | rna-NM_001181967.1_BG1 | cds-NP_013181.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:280296-281630:+ | gene-YLR080W_Bruggeman | rna-NM_001181967.1_Bruggeman | cds-NP_013181.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:280613-281948:+ | gene-YLR080W_CAT1 | rna-NM_001181967.1_CAT1 | cds-NP_013181.1_CAT1 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:277501-278835:+ | gene-YLR080W_CBS1585 | rna-NM_001181967.1_CBS1585 | cds-NP_013181.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:268127-269461:+ | gene-YLR080W_CBS436 | rna-NM_001181967.1_CBS436 | cds-NP_013181.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:275943-277277:+ | gene-YLR080W_CBS6412 | rna-NM_001181967.1_CBS6412 | cds-NP_013181.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:277772-279106:+ | gene-YLR080W_CBS6413 | rna-NM_001181967.1_CBS6413 | cds-NP_013181.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:272933-274267:+ | gene-YLR080W_CENPK1137D | rna-NM_001181967.1_CENPK1137D | cds-NP_013181.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:269910-271243:+ | gene-YLR080W_EthanolRed | rna-NM_001181967.1_EthanolRed | cds-NP_013181.1_EthanolRed | 99.2 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:269786-271119:+ | gene-YLR080W_FaliES1 | rna-NM_001181967.1_FaliES1 | cds-NP_013181.1_FaliES1 | 99.2 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:44717-46051:+ | gene-YLR080W_JAY291 | rna-NM_001181967.1_JAY291 | cds-NP_013181.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:277662-278996:+ | gene-YLR080W_MUCL30387 | rna-NM_001181967.1_MUCL30387 | cds-NP_013181.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:285309-286643:+ | gene-YLR080W_MUCL30388 | rna-NM_001181967.1_MUCL30388 | cds-NP_013181.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:278019-279353:+ | gene-YLR080W_MUCL39482 | rna-NM_001181967.1_MUCL39482 | cds-NP_013181.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:277943-279277:+ | gene-YLR080W_MUCL42920 | rna-NM_001181967.1_MUCL42920 | cds-NP_013181.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:287890-289224:+ | gene-YLR080W_NCIM3186 | rna-NM_001181967.1_NCIM3186 | cds-NP_013181.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:270091-271425:+ | gene-YLR080W_NCYC1407 | rna-NM_001181967.1_NCYC1407 | cds-NP_013181.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:275952-277286:+ | gene-YLR080W_PE2H3 | rna-NM_001181967.1_PE2H3 | cds-NP_013181.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:275693-277027:+ | gene-YLR080W_PE2H4 | rna-NM_001181967.1_PE2H4 | cds-NP_013181.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:287916-289250:+ | gene-YLR080W_S288C | rna-NM_001181967.1_S288C | cds-NP_013181.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:84877-86211:- | gene-YLR080W_SA1 | rna-NM_001181967.1_SA1 | cds-NP_013181.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:269962-271295:+ | gene-YLR080W_ThermosaccDry | rna-NM_001181967.1_ThermosaccDry | cds-NP_013181.1_ThermosaccDry | 99.2 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:283647-284981:+ | gene-YLR080W_VR1 | rna-NM_001181967.1_VR1 | cds-NP_013181.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:269345-270681:+ | gene-YLR080W_ZTW1 | rna-NM_001181967.1_ZTW1 | cds-NP_013181.1_ZTW1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:278195-279546:+ | gene-YLR080W_Sparadoxus | rna-NM_001181967.1_Sparadoxus | cds-NP_013181.1_Sparadoxus | 86.3 | 99.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |