Gene name: EMP24
Reference locus (S288C): YGL200C
Gene biotype: protein_coding
Description: Endosomal protein P24B; Component of the p24 complex; role in misfolded protein quality control; binds to GPI anchor proteins and mediates their efficient transport from the ER to the Golgi; integral membrane protein that associates with endoplasmic reticulum-derived COPII-coated vesicles
Top 10 interactors (score): ERV25 (0.999); ERP1 (0.999); ERP6 (0.996); ERP3 (0.983); ERP5 (0.98); SEC23 (0.947); ERP2 (0.943); SEC13 (0.909); ERV29 (0.884); RET2 (0.865); SEC21 (0.849); SEC22 (0.848); ERP4 (0.848); ERV14 (0.845); GAS1 (0.844); TED1 (0.838); ERD2 (0.825); RER1 (0.819); SAR1 (0.816); EMP47 (0.814)
Homologues (species, bitscore): TMED2 (Homo sapiens, 109.0); Tmed2 (Mus musculus, 109.0); tmed2 (Danio rerio, 116.3); tmed2 (Xenopus tropicalis, 109.8); CHOp24 (Drosophila melanogaster, 104.8); sel-9 (Caenorhabditis elegans, 111.7); AT1G09580 (Arabidopsis thaliana, 72.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:125229-125840:- | gene-YGL200C_AKU4011 | rna-NM_001181065.3_AKU4011 | cds-NP_011315.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:284578-285189:+ | gene-YGL200C_BG1 | rna-NM_001181065.3_BG1 | cds-NP_011315.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:126272-126883:- | gene-YGL200C_Bruggeman | rna-NM_001181065.3_Bruggeman | cds-NP_011315.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:123086-123697:- | gene-YGL200C_CAT1 | rna-NM_001181065.3_CAT1 | cds-NP_011315.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:128374-128985:- | gene-YGL200C_CBS1585 | rna-NM_001181065.3_CBS1585 | cds-NP_011315.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:123350-123961:- | gene-YGL200C_CBS436 | rna-NM_001181065.3_CBS436 | cds-NP_011315.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:115144-115755:- | gene-YGL200C_CBS6412 | rna-NM_001181065.3_CBS6412 | cds-NP_011315.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:122679-123290:- | gene-YGL200C_CBS6413 | rna-NM_001181065.3_CBS6413 | cds-NP_011315.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:122876-123487:- | gene-YGL200C_CENPK1137D | rna-NM_001181065.3_CENPK1137D | cds-NP_011315.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:115211-115822:- | gene-YGL200C_EthanolRed | rna-NM_001181065.3_EthanolRed | cds-NP_011315.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:116213-116824:- | gene-YGL200C_FaliES1 | rna-NM_001181065.3_FaliES1 | cds-NP_011315.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:41527-42138:- | gene-YGL200C_JAY291 | rna-NM_001181065.3_JAY291 | cds-NP_011315.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:124709-125320:- | gene-YGL200C_MUCL30387 | rna-NM_001181065.3_MUCL30387 | cds-NP_011315.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:127047-127658:- | gene-YGL200C_MUCL30388 | rna-NM_001181065.3_MUCL30388 | cds-NP_011315.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:125375-125986:- | gene-YGL200C_MUCL39482 | rna-NM_001181065.3_MUCL39482 | cds-NP_011315.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:127990-128601:- | gene-YGL200C_MUCL42920 | rna-NM_001181065.3_MUCL42920 | cds-NP_011315.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:122694-123305:- | gene-YGL200C_NCIM3186 | rna-NM_001181065.3_NCIM3186 | cds-NP_011315.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:116859-117470:- | gene-YGL200C_NCYC1407 | rna-NM_001181065.3_NCYC1407 | cds-NP_011315.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:118855-119466:- | gene-YGL200C_PE2H3 | rna-NM_001181065.3_PE2H3 | cds-NP_011315.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:118403-119014:- | gene-YGL200C_PE2H4 | rna-NM_001181065.3_PE2H4 | cds-NP_011315.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:122694-123305:- | gene-YGL200C_S288C | rna-NM_001181065.3_S288C | cds-NP_011315.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:252200-252811:+ | gene-YGL200C_SA1 | rna-NM_001181065.3_SA1 | cds-NP_011315.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:116473-117084:- | gene-YGL200C_ThermosaccDry | rna-NM_001181065.3_ThermosaccDry | cds-NP_011315.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:123762-124373:- | gene-YGL200C_VR1 | rna-NM_001181065.3_VR1 | cds-NP_011315.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:115013-115624:- | gene-YGL200C_ZTW1 | rna-NM_001181065.3_ZTW1 | cds-NP_011315.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:121912-122523:- | gene-YGL200C_Sparadoxus | rna-NM_001181065.3_Sparadoxus | cds-NP_011315.3_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |