Gene name: EMC2
Reference locus (S288C): YJR088C
Gene biotype: protein_coding
Description: Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm Y57G7A.10/EMC-2, fly CG17556, human TTC35
Top 10 interactors (score): EMC6 (0.999); EMC3 (0.999); EMC1 (0.999); EMC4 (0.999); EMC5 (0.998); EMC10 (0.992); SOP4 (0.968); YOR289W (0.962); CHO2 (0.767); ERG9 (0.719); ALG3 (0.701); PBR1 (0.7); DPM1 (0.653); YET1 (0.633); YET3 (0.631); TMA46 (0.626); PSD1 (0.602); OPI3 (0.598); NVJ2 (0.59); ALG12 (0.575)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:558024-558902:- | gene-YJR088C_AKU4011 | rna-NM_001181745.1_AKU4011 | cds-NP_012621.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:48670-49548:+ | gene-YJR088C_BG1 | rna-NM_001181745.1_BG1 | cds-NP_012621.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:571538-572416:- | gene-YJR088C_Bruggeman | rna-NM_001181745.1_Bruggeman | cds-NP_012621.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:575937-576815:- | gene-YJR088C_CAT1 | rna-NM_001181745.1_CAT1 | cds-NP_012621.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:570088-570966:- | gene-YJR088C_CBS1585 | rna-NM_001181745.1_CBS1585 | cds-NP_012621.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:588163-589041:- | gene-YJR088C_CBS436 | rna-NM_001181745.1_CBS436 | cds-NP_012621.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:557236-558114:- | gene-YJR088C_CBS6412 | rna-NM_001181745.1_CBS6412 | cds-NP_012621.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:559530-560408:- | gene-YJR088C_CBS6413 | rna-NM_001181745.1_CBS6413 | cds-NP_012621.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:568851-569729:- | gene-YJR088C_CENPK1137D | rna-NM_001181745.1_CENPK1137D | cds-NP_012621.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:562414-563292:- | gene-YJR088C_EthanolRed | rna-NM_001181745.1_EthanolRed | cds-NP_012621.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:573880-574758:- | gene-YJR088C_FaliES1 | rna-NM_001181745.1_FaliES1 | cds-NP_012621.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:114627-115505:+ | gene-YJR088C_JAY291 | rna-NM_001181745.1_JAY291 | cds-NP_012621.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:572067-572945:- | gene-YJR088C_MUCL30387 | rna-NM_001181745.1_MUCL30387 | cds-NP_012621.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:569363-570241:- | gene-YJR088C_MUCL30388 | rna-NM_001181745.1_MUCL30388 | cds-NP_012621.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:563548-564426:- | gene-YJR088C_MUCL39482 | rna-NM_001181745.1_MUCL39482 | cds-NP_012621.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:567794-568672:- | gene-YJR088C_MUCL42920 | rna-NM_001181745.1_MUCL42920 | cds-NP_012621.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:586474-587352:- | gene-YJR088C_NCIM3186 | rna-NM_001181745.1_NCIM3186 | cds-NP_012621.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:561114-561992:- | gene-YJR088C_NCYC1407 | rna-NM_001181745.1_NCYC1407 | cds-NP_012621.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:579011-579889:- | gene-YJR088C_PE2H3 | rna-NM_001181745.1_PE2H3 | cds-NP_012621.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:572700-573578:- | gene-YJR088C_PE2H4 | rna-NM_001181745.1_PE2H4 | cds-NP_012621.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:586495-587373:- | gene-YJR088C_S288C | rna-NM_001181745.1_S288C | cds-NP_012621.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:45076-45954:- | gene-YJR088C_SA1 | rna-NM_001181745.1_SA1 | cds-NP_012621.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:567814-568692:- | gene-YJR088C_ThermosaccDry | rna-NM_001181745.1_ThermosaccDry | cds-NP_012621.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:569969-570847:- | gene-YJR088C_VR1 | rna-NM_001181745.1_VR1 | cds-NP_012621.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:547209-548087:- | gene-YJR088C_ZTW1 | rna-NM_001181745.1_ZTW1 | cds-NP_012621.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:580574-581452:- | gene-YJR088C_Sparadoxus | rna-NM_001181745.1_Sparadoxus | cds-NP_012621.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |