Gene name: ELP6
Reference locus (S288C): YMR312W
Gene biotype: protein_coding
Description: Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; Belongs to the ELP6 family
Top 10 interactors (score): IKI3 (0.999); ELP4 (0.999); IKI1 (0.999); ELP3 (0.999); ELP2 (0.998); UBA4 (0.948); URM1 (0.924); NCS2 (0.917); NCS6 (0.913); HHT2 (0.876); HHT1 (0.875); KTI12 (0.86); HHF1 (0.85); HHF2 (0.85); DEG1 (0.826); TRM9 (0.813); TRM112 (0.746); TUM1 (0.718); MCM5 (0.713); YPL102C (0.699)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:937965-938786:+ | gene-YMR312W_AKU4011 | rna-NM_001182823.1_AKU4011 | cds-NP_014043.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:15425-16246:- | gene-YMR312W_BG1 | rna-NM_001182823.1_BG1 | cds-NP_014043.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:883375-884196:+ | gene-YMR312W_Bruggeman | rna-NM_001182823.1_Bruggeman | cds-NP_014043.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:885939-886760:+ | gene-YMR312W_CAT1 | rna-NM_001182823.1_CAT1 | cds-NP_014043.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:870218-871039:+ | gene-YMR312W_CBS1585 | rna-NM_001182823.1_CBS1585 | cds-NP_014043.1_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:892507-893328:+ | gene-YMR312W_CBS436 | rna-NM_001182823.1_CBS436 | cds-NP_014043.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:980939-981760:+ | gene-YMR312W_CBS6412 | rna-NM_001182823.1_CBS6412 | cds-NP_014043.1_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:869339-870160:+ | gene-YMR312W_CBS6413 | rna-NM_001182823.1_CBS6413 | cds-NP_014043.1_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:892966-893787:+ | gene-YMR312W_CENPK1137D | rna-NM_001182823.1_CENPK1137D | cds-NP_014043.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:929962-930783:+ | gene-YMR312W_EthanolRed | rna-NM_001182823.1_EthanolRed | cds-NP_014043.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:876203-877024:+ | gene-YMR312W_FaliES1 | rna-NM_001182823.1_FaliES1 | cds-NP_014043.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000096.1:17975-18796:- | gene-YMR312W_JAY291 | rna-NM_001182823.1_JAY291 | cds-NP_014043.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:876487-877308:+ | gene-YMR312W_MUCL30387 | rna-NM_001182823.1_MUCL30387 | cds-NP_014043.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:885978-886799:+ | gene-YMR312W_MUCL30388 | rna-NM_001182823.1_MUCL30388 | cds-NP_014043.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:871279-872100:+ | gene-YMR312W_MUCL39482 | rna-NM_001182823.1_MUCL39482 | cds-NP_014043.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:879590-880411:+ | gene-YMR312W_MUCL42920 | rna-NM_001182823.1_MUCL42920 | cds-NP_014043.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:898359-899180:+ | gene-YMR312W_NCIM3186 | rna-NM_001182823.1_NCIM3186 | cds-NP_014043.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:870939-871760:+ | gene-YMR312W_NCYC1407 | rna-NM_001182823.1_NCYC1407 | cds-NP_014043.1_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:886242-887063:+ | gene-YMR312W_PE2H3 | rna-NM_001182823.1_PE2H3 | cds-NP_014043.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:882224-883045:+ | gene-YMR312W_PE2H4 | rna-NM_001182823.1_PE2H4 | cds-NP_014043.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:898405-899226:+ | gene-YMR312W_S288C | rna-NM_001182823.1_S288C | cds-NP_014043.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:76201-77022:+ | gene-YMR312W_SA1 | rna-NM_001182823.1_SA1 | cds-NP_014043.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:872358-873179:+ | gene-YMR312W_ThermosaccDry | rna-NM_001182823.1_ThermosaccDry | cds-NP_014043.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:886094-886915:+ | gene-YMR312W_VR1 | rna-NM_001182823.1_VR1 | cds-NP_014043.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:287581-288402:+ | gene-YMR312W_ZTW1 | rna-NM_001182823.1_ZTW1 | cds-NP_014043.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:891013-891837:+ | gene-YMR312W_Sparadoxus | rna-NM_001182823.1_Sparadoxus | cds-NP_014043.1_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |