Gene name: ELP4
Reference locus (S288C): YPL101W
Gene biotype: protein_coding
Description: Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; null mutation is functionally complemented by human ELP4
Top 10 interactors (score): IKI1 (0.999); IKI3 (0.999); ELP2 (0.999); ELP6 (0.999); ELP3 (0.999); KTI12 (0.976); FOX2 (0.96); KTI11 (0.95); URM1 (0.933); UBA4 (0.931); NCS6 (0.928); TRM9 (0.885); HHT1 (0.879); HHT2 (0.874); HHF1 (0.851); NCS2 (0.851); HHF2 (0.851); TRM112 (0.775); TAF9 (0.736); BIM1 (0.712)
Homologues (species, bitscore): ELP4 (Homo sapiens, 64.7); Elp4 (Mus musculus, 69.7); elp4 (Danio rerio, 57.8); elp4 (Xenopus tropicalis, 50.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:337849-339219:+ | gene-YPL101W_AKU4011 | rna-NM_001183915.1_AKU4011 | cds-NP_015224.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:543604-544974:+ | gene-YPL101W_BG1 | rna-NM_001183915.1_BG1 | cds-NP_015224.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:363857-365227:+ | gene-YPL101W_Bruggeman | rna-NM_001183915.1_Bruggeman | cds-NP_015224.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:361347-362691:+ | gene-YPL101W_CAT1 | rna-NM_001183915.1_CAT1 | cds-NP_015224.1_CAT1 | 94.4 | 97.3 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:341922-343292:+ | gene-YPL101W_CBS1585 | rna-NM_001183915.1_CBS1585 | cds-NP_015224.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:356596-357966:+ | gene-YPL101W_CBS436 | rna-NM_001183915.1_CBS436 | cds-NP_015224.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:346591-347961:+ | gene-YPL101W_CBS6412 | rna-NM_001183915.1_CBS6412 | cds-NP_015224.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:338558-339928:+ | gene-YPL101W_CBS6413 | rna-NM_001183915.1_CBS6413 | cds-NP_015224.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:360157-361527:+ | gene-YPL101W_CENPK1137D | rna-NM_001183915.1_CENPK1137D | cds-NP_015224.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:336541-337911:+ | gene-YPL101W_EthanolRed | rna-NM_001183915.1_EthanolRed | cds-NP_015224.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:344133-345503:+ | gene-YPL101W_FaliES1 | rna-NM_001183915.1_FaliES1 | cds-NP_015224.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:20313-21683:- | gene-YPL101W_JAY291 | rna-NM_001183915.1_JAY291 | cds-NP_015224.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:355095-356465:+ | gene-YPL101W_MUCL30387 | rna-NM_001183915.1_MUCL30387 | cds-NP_015224.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:579613-580983:+ | gene-YPL101W_MUCL30388 | rna-NM_001183915.1_MUCL30388 | cds-NP_015224.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:335251-336621:+ | gene-YPL101W_MUCL39482 | rna-NM_001183915.1_MUCL39482 | cds-NP_015224.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:392939-394309:+ | gene-YPL101W_MUCL42920 | rna-NM_001183915.1_MUCL42920 | cds-NP_015224.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:360192-361562:+ | gene-YPL101W_NCIM3186 | rna-NM_001183915.1_NCIM3186 | cds-NP_015224.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:341704-343074:+ | gene-YPL101W_NCYC1407 | rna-NM_001183915.1_NCYC1407 | cds-NP_015224.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:349196-350566:+ | gene-YPL101W_PE2H3 | rna-NM_001183915.1_PE2H3 | cds-NP_015224.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:348819-350189:+ | gene-YPL101W_PE2H4 | rna-NM_001183915.1_PE2H4 | cds-NP_015224.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:360209-361579:+ | gene-YPL101W_S288C | rna-NM_001183915.1_S288C | cds-NP_015224.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:12100-13470:- | gene-YPL101W_SA1 | rna-NM_001183915.1_SA1 | cds-NP_015224.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:343931-345301:+ | gene-YPL101W_ThermosaccDry | rna-NM_001183915.1_ThermosaccDry | cds-NP_015224.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:358907-360277:+ | gene-YPL101W_VR1 | rna-NM_001183915.1_VR1 | cds-NP_015224.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:343252-344622:+ | gene-YPL101W_ZTW1 | rna-NM_001183915.1_ZTW1 | cds-NP_015224.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:344921-346300:+ | gene-YPL101W_Sparadoxus | rna-NM_001183915.1_Sparadoxus | cds-NP_015224.1_Sparadoxus | 87.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |