Gene name: ELP2
Reference locus (S288C): YGR200C
Gene biotype: protein_coding
Description: Subunit of Elongator complex; binds to microtubules via conserved alkaline residues; has two seven-bladed WD40 β propellers; Elongator complex is required for modification of wobble nucleosides in tRNA; target of Kluyveromyces lactis zymocin
Top 10 interactors (score): IKI3 (0.999); ELP4 (0.999); ELP3 (0.999); IKI1 (0.999); ELP6 (0.998); KTI12 (0.989); KTI11 (0.985); NCS6 (0.983); URM1 (0.978); UBA4 (0.97); NCS2 (0.957); DPH6 (0.951); TRM9 (0.945); DPH1 (0.945); DPH5 (0.926); UTP21 (0.915); DIP2 (0.91); DPH2 (0.902); MCM5 (0.891); RRT2 (0.886)
Homologues (species, bitscore): ELP2 (Homo sapiens, 349.0); Elp2 (Mus musculus, 372.5); elp2 (Danio rerio, 357.8); elp2 (Xenopus tropicalis, 337.4); Elp2 (Drosophila melanogaster, 362.8); elpc-2 (Caenorhabditis elegans, 270.0); ELP2 (Arabidopsis thaliana, 312.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:865428-867794:- | gene-YGR200C_AKU4011 | rna-NM_001181329.3_AKU4011 | cds-NP_011716.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:145842-148208:- | gene-YGR200C_BG1 | rna-NM_001181329.3_BG1 | cds-NP_011716.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:873630-875996:- | gene-YGR200C_Bruggeman | rna-NM_001181329.3_Bruggeman | cds-NP_011716.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:871626-873992:- | gene-YGR200C_CAT1 | rna-NM_001181329.3_CAT1 | cds-NP_011716.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:868868-871234:- | gene-YGR200C_CBS1585 | rna-NM_001181329.3_CBS1585 | cds-NP_011716.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:872224-874590:- | gene-YGR200C_CBS436 | rna-NM_001181329.3_CBS436 | cds-NP_011716.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:859739-862105:- | gene-YGR200C_CBS6412 | rna-NM_001181329.3_CBS6412 | cds-NP_011716.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:865797-868163:- | gene-YGR200C_CBS6413 | rna-NM_001181329.3_CBS6413 | cds-NP_011716.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:899630-901996:- | gene-YGR200C_CENPK1137D | rna-NM_001181329.3_CENPK1137D | cds-NP_011716.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:854248-856614:- | gene-YGR200C_EthanolRed | rna-NM_001181329.3_EthanolRed | cds-NP_011716.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:858639-861005:- | gene-YGR200C_FaliES1 | rna-NM_001181329.3_FaliES1 | cds-NP_011716.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:16369-18735:- | gene-YGR200C_JAY291 | rna-NM_001181329.3_JAY291 | cds-NP_011716.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:871115-873481:- | gene-YGR200C_MUCL30387 | rna-NM_001181329.3_MUCL30387 | cds-NP_011716.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:870799-873165:- | gene-YGR200C_MUCL30388 | rna-NM_001181329.3_MUCL30388 | cds-NP_011716.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:863942-866308:- | gene-YGR200C_MUCL39482 | rna-NM_001181329.3_MUCL39482 | cds-NP_011716.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:881493-883859:- | gene-YGR200C_MUCL42920 | rna-NM_001181329.3_MUCL42920 | cds-NP_011716.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:899904-902270:- | gene-YGR200C_NCIM3186 | rna-NM_001181329.3_NCIM3186 | cds-NP_011716.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:859600-861966:- | gene-YGR200C_NCYC1407 | rna-NM_001181329.3_NCYC1407 | cds-NP_011716.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:884210-886576:- | gene-YGR200C_PE2H3 | rna-NM_001181329.3_PE2H3 | cds-NP_011716.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:889320-891686:- | gene-YGR200C_PE2H4 | rna-NM_001181329.3_PE2H4 | cds-NP_011716.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:899904-902270:- | gene-YGR200C_S288C | rna-NM_001181329.3_S288C | cds-NP_011716.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000101.1:21361-23727:- | gene-YGR200C_SA1 | rna-NM_001181329.3_SA1 | cds-NP_011716.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:879150-881516:- | gene-YGR200C_ThermosaccDry | rna-NM_001181329.3_ThermosaccDry | cds-NP_011716.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:983638-986004:- | gene-YGR200C_VR1 | rna-NM_001181329.3_VR1 | cds-NP_011716.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:180598-182964:- | gene-YGR200C_ZTW1 | rna-NM_001181329.3_ZTW1 | cds-NP_011716.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:871147-873513:- | gene-YGR200C_Sparadoxus | rna-NM_001181329.3_Sparadoxus | cds-NP_011716.3_Sparadoxus | 90.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |