Gene name: ELO1
Reference locus (S288C): YJL196C
Gene biotype: protein_coding
Description: Elongation of fatty acids protein 1; Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, ELO2, that arose from the whole genome duplication
Top 10 interactors (score): ELO2 (0.999); IFA38 (0.987); OLE1 (0.986); TSC13 (0.975); PHS1 (0.968); CEM1 (0.864); FAS2 (0.819); ELO3 (0.815); FAS1 (0.785); ACC1 (0.743); ETR1 (0.697); MAC1 (0.655); DGA1 (0.62); FAT1 (0.608); OPI3 (0.594); HTD2 (0.572); HFA1 (0.568); LAC1 (0.563); OAR1 (0.544); FAA2 (0.534)
Homologues (species, bitscore): ELOVL6 (Homo sapiens, 87.8); Elovl6 (Mus musculus, 87.0); elovl5 (Danio rerio, 89.0); elovl5 (Xenopus tropicalis, 82.0); CG8534 (Drosophila melanogaster, 89.7); elo-1 (Caenorhabditis elegans, 93.6); AT3G06470 (Arabidopsis thaliana, 88.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:56249-57181:- | gene-YJL196C_AKU4011 | rna-NM_001181629.1_AKU4011 | cds-NP_012339.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:33529-34461:- | gene-YJL196C_BG1 | rna-NM_001181629.1_BG1 | cds-NP_012339.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:68061-68993:- | gene-YJL196C_Bruggeman | rna-NM_001181629.1_Bruggeman | cds-NP_012339.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:71270-72202:- | gene-YJL196C_CAT1 | rna-NM_001181629.1_CAT1 | cds-NP_012339.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:61884-62816:- | gene-YJL196C_CBS1585 | rna-NM_001181629.1_CBS1585 | cds-NP_012339.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:86631-87563:- | gene-YJL196C_CBS436 | rna-NM_001181629.1_CBS436 | cds-NP_012339.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:58366-59298:- | gene-YJL196C_CBS6412 | rna-NM_001181629.1_CBS6412 | cds-NP_012339.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:59359-60291:- | gene-YJL196C_CBS6413 | rna-NM_001181629.1_CBS6413 | cds-NP_012339.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:50315-51247:- | gene-YJL196C_CENPK1137D | rna-NM_001181629.1_CENPK1137D | cds-NP_012339.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:60546-61478:- | gene-YJL196C_EthanolRed | rna-NM_001181629.1_EthanolRed | cds-NP_012339.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:65825-66757:- | gene-YJL196C_FaliES1 | rna-NM_001181629.1_FaliES1 | cds-NP_012339.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:51991-52923:+ | gene-YJL196C_JAY291 | rna-NM_001181629.1_JAY291 | cds-NP_012339.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:69795-70727:- | gene-YJL196C_MUCL30387 | rna-NM_001181629.1_MUCL30387 | cds-NP_012339.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:65950-66882:- | gene-YJL196C_MUCL30388 | rna-NM_001181629.1_MUCL30388 | cds-NP_012339.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:60626-61558:- | gene-YJL196C_MUCL39482 | rna-NM_001181629.1_MUCL39482 | cds-NP_012339.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:65221-66153:- | gene-YJL196C_MUCL42920 | rna-NM_001181629.1_MUCL42920 | cds-NP_012339.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:67829-68761:- | gene-YJL196C_NCIM3186 | rna-NM_001181629.1_NCIM3186 | cds-NP_012339.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:59236-60168:- | gene-YJL196C_NCYC1407 | rna-NM_001181629.1_NCYC1407 | cds-NP_012339.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:71929-72861:- | gene-YJL196C_PE2H3 | rna-NM_001181629.1_PE2H3 | cds-NP_012339.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:71568-72500:- | gene-YJL196C_PE2H4 | rna-NM_001181629.1_PE2H4 | cds-NP_012339.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:67850-68782:- | gene-YJL196C_S288C | rna-NM_001181629.1_S288C | cds-NP_012339.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:85101-86033:+ | gene-YJL196C_SA1 | rna-NM_001181629.1_SA1 | cds-NP_012339.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:59018-59950:- | gene-YJL196C_ThermosaccDry | rna-NM_001181629.1_ThermosaccDry | cds-NP_012339.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:65888-66820:- | gene-YJL196C_VR1 | rna-NM_001181629.1_VR1 | cds-NP_012339.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:46603-47535:- | gene-YJL196C_ZTW1 | rna-NM_001181629.1_ZTW1 | cds-NP_012339.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:70906-71838:- | gene-YJL196C_Sparadoxus | rna-NM_001181629.1_Sparadoxus | cds-NP_012339.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |