ELO1 (YJL196C)


Gene profile

Gene name: ELO1
Reference locus (S288C): YJL196C
Gene biotype: protein_coding

Description: Elongation of fatty acids protein 1; Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, ELO2, that arose from the whole genome duplication

Top 10 interactors (score): ELO2 (0.999); IFA38 (0.987); OLE1 (0.986); TSC13 (0.975); PHS1 (0.968); CEM1 (0.864); FAS2 (0.819); ELO3 (0.815); FAS1 (0.785); ACC1 (0.743); ETR1 (0.697); MAC1 (0.655); DGA1 (0.62); FAT1 (0.608); OPI3 (0.594); HTD2 (0.572); HFA1 (0.568); LAC1 (0.563); OAR1 (0.544); FAA2 (0.534)

Homologues (species, bitscore): ELOVL6 (Homo sapiens, 87.8); Elovl6 (Mus musculus, 87.0); elovl5 (Danio rerio, 89.0); elovl5 (Xenopus tropicalis, 82.0); CG8534 (Drosophila melanogaster, 89.7); elo-1 (Caenorhabditis elegans, 93.6); AT3G06470 (Arabidopsis thaliana, 88.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005304.1:56249-57181:- gene-YJL196C_AKU4011 rna-NM_001181629.1_AKU4011 cds-NP_012339.1_AKU4011 99.8 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000181.1:33529-34461:- gene-YJL196C_BG1 rna-NM_001181629.1_BG1 cds-NP_012339.1_BG1 99.7 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005512.1:68061-68993:- gene-YJL196C_Bruggeman rna-NM_001181629.1_Bruggeman cds-NP_012339.1_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005528.1:71270-72202:- gene-YJL196C_CAT1 rna-NM_001181629.1_CAT1 cds-NP_012339.1_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005368.1:61884-62816:- gene-YJL196C_CBS1585 rna-NM_001181629.1_CBS1585 cds-NP_012339.1_CBS1585 99.7 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005352.1:86631-87563:- gene-YJL196C_CBS436 rna-NM_001181629.1_CBS436 cds-NP_012339.1_CBS436 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005336.1:58366-59298:- gene-YJL196C_CBS6412 rna-NM_001181629.1_CBS6412 cds-NP_012339.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005320.1:59359-60291:- gene-YJL196C_CBS6413 rna-NM_001181629.1_CBS6413 cds-NP_012339.1_CBS6413 99.7 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001531.1:50315-51247:- gene-YJL196C_CENPK1137D rna-NM_001181629.1_CENPK1137D cds-NP_012339.1_CENPK1137D 99.7 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005480.1:60546-61478:- gene-YJL196C_EthanolRed rna-NM_001181629.1_EthanolRed cds-NP_012339.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005544.1:65825-66757:- gene-YJL196C_FaliES1 rna-NM_001181629.1_FaliES1 cds-NP_012339.1_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000164.1:51991-52923:+ gene-YJL196C_JAY291 rna-NM_001181629.1_JAY291 cds-NP_012339.1_JAY291 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005416.1:69795-70727:- gene-YJL196C_MUCL30387 rna-NM_001181629.1_MUCL30387 cds-NP_012339.1_MUCL30387 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005448.1:65950-66882:- gene-YJL196C_MUCL30388 rna-NM_001181629.1_MUCL30388 cds-NP_012339.1_MUCL30388 99.8 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005288.1:60626-61558:- gene-YJL196C_MUCL39482 rna-NM_001181629.1_MUCL39482 cds-NP_012339.1_MUCL39482 99.7 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:65221-66153:- gene-YJL196C_MUCL42920 rna-NM_001181629.1_MUCL42920 cds-NP_012339.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011819.1:67829-68761:- gene-YJL196C_NCIM3186 rna-NM_001181629.1_NCIM3186 cds-NP_012339.1_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005272.1:59236-60168:- gene-YJL196C_NCYC1407 rna-NM_001181629.1_NCYC1407 cds-NP_012339.1_NCYC1407 99.7 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994149.1:71929-72861:- gene-YJL196C_PE2H3 rna-NM_001181629.1_PE2H3 cds-NP_012339.1_PE2H3 99.7 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999881.1:71568-72500:- gene-YJL196C_PE2H4 rna-NM_001181629.1_PE2H4 cds-NP_012339.1_PE2H4 99.7 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001142.9:67850-68782:- gene-YJL196C_S288C rna-NM_001181629.1_S288C cds-NP_012339.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000022.1:85101-86033:+ gene-YJL196C_SA1 rna-NM_001181629.1_SA1 cds-NP_012339.1_SA1 99.7 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005496.1:59018-59950:- gene-YJL196C_ThermosaccDry rna-NM_001181629.1_ThermosaccDry cds-NP_012339.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005464.1:65888-66820:- gene-YJL196C_VR1 rna-NM_001181629.1_VR1 cds-NP_012339.1_VR1 99.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000021.1:46603-47535:- gene-YJL196C_ZTW1 rna-NM_001181629.1_ZTW1 cds-NP_012339.1_ZTW1 99.6 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047496.1:70906-71838:- gene-YJL196C_Sparadoxus rna-NM_001181629.1_Sparadoxus cds-NP_012339.1_Sparadoxus 92.0 100.0 Verified 1 1 1 False True False False False

Additional files