Gene name: ELF1
Reference locus (S288C): YKL160W
Gene biotype: protein_coding
Description: Transcription elongation factor with a conserved zinc finger domain; implicated in the maintenance of proper chromatin structure in actively transcribed regions; deletion inhibits Brome mosaic virus (BMV) gene expression
Top 10 interactors (score): RPB4 (0.999); RPB2 (0.999); RPB3 (0.999); RPB11 (0.999); SPT4 (0.999); RPO26 (0.999); SPT5 (0.999); RPB8 (0.999); RPB5 (0.999); RPB10 (0.999); RPO21 (0.999); RPB7 (0.999); SRB7 (0.877); SPN1 (0.847); CKA1 (0.757); RPC10 (0.742); RPB9 (0.737); RRP46 (0.707); FAL1 (0.704); DST1 (0.692)
Homologues (species, bitscore): ELOF1 (Homo sapiens, 90.1); Elof1 (Mus musculus, 90.1); elof1 (Danio rerio, 89.7); elof1 (Xenopus tropicalis, 59.3); CG40228 (Drosophila melanogaster, 91.3); Y54G11A.11 (Caenorhabditis elegans, 102.4); AT5G46030 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:140162-140599:+ | gene-YKL160W_AKU4011 | rna-NM_001179726.1_AKU4011 | cds-NP_012762.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:116734-117171:+ | gene-YKL160W_BG1 | rna-NM_001179726.1_BG1 | cds-NP_012762.1_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:157818-158255:+ | gene-YKL160W_Bruggeman | rna-NM_001179726.1_Bruggeman | cds-NP_012762.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:152635-153072:+ | gene-YKL160W_CAT1 | rna-NM_001179726.1_CAT1 | cds-NP_012762.1_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:152385-152822:+ | gene-YKL160W_CBS1585 | rna-NM_001179726.1_CBS1585 | cds-NP_012762.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:150977-151414:+ | gene-YKL160W_CBS436 | rna-NM_001179726.1_CBS436 | cds-NP_012762.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:137410-137847:+ | gene-YKL160W_CBS6412 | rna-NM_001179726.1_CBS6412 | cds-NP_012762.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:152856-153293:+ | gene-YKL160W_CBS6413 | rna-NM_001179726.1_CBS6413 | cds-NP_012762.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:152916-153353:+ | gene-YKL160W_CENPK1137D | rna-NM_001179726.1_CENPK1137D | cds-NP_012762.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:150908-151345:+ | gene-YKL160W_EthanolRed | rna-NM_001179726.1_EthanolRed | cds-NP_012762.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:151720-152157:+ | gene-YKL160W_FaliES1 | rna-NM_001179726.1_FaliES1 | cds-NP_012762.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000239.2:10685-11122:+ | gene-YKL160W_JAY291 | rna-NM_001179726.1_JAY291 | cds-NP_012762.1_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:159915-160352:+ | gene-YKL160W_MUCL30387 | rna-NM_001179726.1_MUCL30387 | cds-NP_012762.1_MUCL30387 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:154270-154707:+ | gene-YKL160W_MUCL30388 | rna-NM_001179726.1_MUCL30388 | cds-NP_012762.1_MUCL30388 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:152195-152632:+ | gene-YKL160W_MUCL39482 | rna-NM_001179726.1_MUCL39482 | cds-NP_012762.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:156601-157038:+ | gene-YKL160W_MUCL42920 | rna-NM_001179726.1_MUCL42920 | cds-NP_012762.1_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:153258-153695:+ | gene-YKL160W_NCIM3186 | rna-NM_001179726.1_NCIM3186 | cds-NP_012762.1_NCIM3186 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:152387-152824:+ | gene-YKL160W_NCYC1407 | rna-NM_001179726.1_NCYC1407 | cds-NP_012762.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:159461-159898:+ | gene-YKL160W_PE2H3 | rna-NM_001179726.1_PE2H3 | cds-NP_012762.1_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:155755-156192:+ | gene-YKL160W_PE2H4 | rna-NM_001179726.1_PE2H4 | cds-NP_012762.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:153269-153706:+ | gene-YKL160W_S288C | rna-NM_001179726.1_S288C | cds-NP_012762.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:69686-70123:+ | gene-YKL160W_SA1 | rna-NM_001179726.1_SA1 | cds-NP_012762.1_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:152420-152857:+ | gene-YKL160W_ThermosaccDry | rna-NM_001179726.1_ThermosaccDry | cds-NP_012762.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:151255-151692:+ | gene-YKL160W_VR1 | rna-NM_001179726.1_VR1 | cds-NP_012762.1_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:150940-151377:+ | gene-YKL160W_ZTW1 | rna-NM_001179726.1_ZTW1 | cds-NP_012762.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:167097-167534:+ | gene-YKL160W_Sparadoxus | rna-NM_001179726.1_Sparadoxus | cds-NP_012762.1_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |