Gene name: ELC1
Reference locus (S288C): YPL046C
Gene biotype: protein_coding
Description: Elongin-C; Elongin C, conserved among eukaryotes; forms a complex with Cul3p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; plays a role in global genomic repair
Top 10 interactors (score): HRT1 (0.999); ELA1 (0.999); CUL3 (0.999); CDC53 (0.997); RAD7 (0.996); RAD16 (0.977); ASC1 (0.974); RPO21 (0.973); SKP1 (0.963); RRI1 (0.946); PAC10 (0.915); RAD26 (0.888); RSP5 (0.883); BET2 (0.875); PRS1 (0.874); APC11 (0.871); RPB9 (0.854); UBX5 (0.853); UBA3 (0.835); PHO81 (0.835)
Homologues (species, bitscore): TCEB1 (Homo sapiens, 72.0); Tceb1 (Mus musculus, 72.0); tceb1a (Danio rerio, 72.0); tceb1 (Xenopus tropicalis, 72.0); EloC (Drosophila melanogaster, 73.2); elc-1 (Caenorhabditis elegans, 75.9); AT5G59140 (Arabidopsis thaliana, 63.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:438145-438444:- | gene-YPL046C_AKU4011 | rna-NM_001183860.1_AKU4011 | cds-NP_015279.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:459002-459301:+ | gene-YPL046C_BG1 | rna-NM_001183860.1_BG1 | cds-NP_015279.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:515085-515384:- | gene-YPL046C_Bruggeman | rna-NM_001183860.1_Bruggeman | cds-NP_015279.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:554771-555070:- | gene-YPL046C_CAT1 | rna-NM_001183860.1_CAT1 | cds-NP_015279.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:442213-442512:- | gene-YPL046C_CBS1585 | rna-NM_001183860.1_CBS1585 | cds-NP_015279.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:456330-456629:- | gene-YPL046C_CBS436 | rna-NM_001183860.1_CBS436 | cds-NP_015279.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:446403-446702:- | gene-YPL046C_CBS6412 | rna-NM_001183860.1_CBS6412 | cds-NP_015279.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:438764-439063:- | gene-YPL046C_CBS6413 | rna-NM_001183860.1_CBS6413 | cds-NP_015279.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:466621-466920:- | gene-YPL046C_CENPK1137D | rna-NM_001183860.1_CENPK1137D | cds-NP_015279.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:436500-436799:- | gene-YPL046C_EthanolRed | rna-NM_001183860.1_EthanolRed | cds-NP_015279.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:444330-444629:- | gene-YPL046C_FaliES1 | rna-NM_001183860.1_FaliES1 | cds-NP_015279.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:52921-53220:- | gene-YPL046C_JAY291 | rna-NM_001183860.1_JAY291 | cds-NP_015279.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:456019-456318:- | gene-YPL046C_MUCL30387 | rna-NM_001183860.1_MUCL30387 | cds-NP_015279.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:455160-455459:- | gene-YPL046C_MUCL30388 | rna-NM_001183860.1_MUCL30388 | cds-NP_015279.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:435529-435828:- | gene-YPL046C_MUCL39482 | rna-NM_001183860.1_MUCL39482 | cds-NP_015279.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:494123-494422:- | gene-YPL046C_MUCL42920 | rna-NM_001183860.1_MUCL42920 | cds-NP_015279.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:466627-466926:- | gene-YPL046C_NCIM3186 | rna-NM_001183860.1_NCIM3186 | cds-NP_015279.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:442807-443106:- | gene-YPL046C_NCYC1407 | rna-NM_001183860.1_NCYC1407 | cds-NP_015279.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:449415-449714:- | gene-YPL046C_PE2H3 | rna-NM_001183860.1_PE2H3 | cds-NP_015279.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:449030-449329:- | gene-YPL046C_PE2H4 | rna-NM_001183860.1_PE2H4 | cds-NP_015279.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:466644-466943:- | gene-YPL046C_S288C | rna-NM_001183860.1_S288C | cds-NP_015279.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:4472-4771:- | gene-YPL046C_SA1 | rna-NM_001183860.1_SA1 | cds-NP_015279.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:444129-444428:- | gene-YPL046C_ThermosaccDry | rna-NM_001183860.1_ThermosaccDry | cds-NP_015279.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:458946-459245:- | gene-YPL046C_VR1 | rna-NM_001183860.1_VR1 | cds-NP_015279.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:443431-443730:- | gene-YPL046C_ZTW1 | rna-NM_001183860.1_ZTW1 | cds-NP_015279.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:444055-444354:- | gene-YPL046C_Sparadoxus | rna-NM_001183860.1_Sparadoxus | cds-NP_015279.1_Sparadoxus | 88.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |