Gene name: ELA1
Reference locus (S288C): YNL230C
Gene biotype: protein_coding
Description: Elongin-A; Elongin A; F-box protein that forms a heterodimer with Elc1p and is required for ubiquitin-dependent degradation of the RNA Polymerase II subunit Rpo21p; subunit of the Elongin-Cullin-Socs (ECS) ligase complex; Belongs to the ELA1 family
Top 10 interactors (score): ELC1 (0.999); HRT1 (0.975); CUL3 (0.956); DST1 (0.951); RPO21 (0.949); RPL5 (0.877); SPN1 (0.866); RPS15 (0.838); RAD7 (0.821); RPB2 (0.758); RPS3 (0.752); RSP5 (0.741); LEO1 (0.732); RAD16 (0.729); SSL1 (0.725); RPL33B (0.715); RPL33A (0.715); SSN3 (0.712); YDR306C (0.705); UBX5 (0.696)
Homologues (species, bitscore): zgc:55573 (Danio rerio, 51.2); eloa (Xenopus tropicalis, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:211305-212444:- | gene-YNL230C_AKU4011 | rna-NM_001183068.1_AKU4011 | cds-NP_014169.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:115250-116389:- | gene-YNL230C_BG1 | rna-NM_001183068.1_BG1 | cds-NP_014169.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:221356-222495:- | gene-YNL230C_Bruggeman | rna-NM_001183068.1_Bruggeman | cds-NP_014169.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:228512-229651:- | gene-YNL230C_CAT1 | rna-NM_001183068.1_CAT1 | cds-NP_014169.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:211702-212841:- | gene-YNL230C_CBS1585 | rna-NM_001183068.1_CBS1585 | cds-NP_014169.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:206788-207927:- | gene-YNL230C_CBS436 | rna-NM_001183068.1_CBS436 | cds-NP_014169.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:207736-208875:- | gene-YNL230C_CBS6412 | rna-NM_001183068.1_CBS6412 | cds-NP_014169.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:208384-209523:- | gene-YNL230C_CBS6413 | rna-NM_001183068.1_CBS6413 | cds-NP_014169.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:211334-212473:- | gene-YNL230C_CENPK1137D | rna-NM_001183068.1_CENPK1137D | cds-NP_014169.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:208955-210094:- | gene-YNL230C_EthanolRed | rna-NM_001183068.1_EthanolRed | cds-NP_014169.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:203697-204836:- | gene-YNL230C_FaliES1 | rna-NM_001183068.1_FaliES1 | cds-NP_014169.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:114842-115981:- | gene-YNL230C_JAY291 | rna-NM_001183068.1_JAY291 | cds-NP_014169.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:216890-218029:- | gene-YNL230C_MUCL30387 | rna-NM_001183068.1_MUCL30387 | cds-NP_014169.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:215475-216614:- | gene-YNL230C_MUCL30388 | rna-NM_001183068.1_MUCL30388 | cds-NP_014169.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:209192-210331:- | gene-YNL230C_MUCL39482 | rna-NM_001183068.1_MUCL39482 | cds-NP_014169.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:211447-212586:- | gene-YNL230C_MUCL42920 | rna-NM_001183068.1_MUCL42920 | cds-NP_014169.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:217492-218631:- | gene-YNL230C_NCIM3186 | rna-NM_001183068.1_NCIM3186 | cds-NP_014169.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:211285-212424:- | gene-YNL230C_NCYC1407 | rna-NM_001183068.1_NCYC1407 | cds-NP_014169.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:208185-209324:- | gene-YNL230C_PE2H3 | rna-NM_001183068.1_PE2H3 | cds-NP_014169.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:207573-208712:- | gene-YNL230C_PE2H4 | rna-NM_001183068.1_PE2H4 | cds-NP_014169.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:217523-218662:- | gene-YNL230C_S288C | rna-NM_001183068.1_S288C | cds-NP_014169.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:33638-34777:+ | gene-YNL230C_SA1 | rna-NM_001183068.1_SA1 | cds-NP_014169.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:204553-205692:- | gene-YNL230C_ThermosaccDry | rna-NM_001183068.1_ThermosaccDry | cds-NP_014169.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:223541-224680:- | gene-YNL230C_VR1 | rna-NM_001183068.1_VR1 | cds-NP_014169.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:114871-116010:- | gene-YNL230C_ZTW1 | rna-NM_001183068.1_ZTW1 | cds-NP_014169.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:214887-216032:- | gene-YNL230C_Sparadoxus | rna-NM_001183068.1_Sparadoxus | cds-NP_014169.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |