Gene name: EGD1
Reference locus (S288C): YPL037C
Gene biotype: protein_coding
Description: Subunit beta1 of the nascent polypeptide-associated complex (NAC); involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b; EGD1 has a paralog, BTT1, that arose from the whole genome duplication; Belongs to the NAC-beta family
Top 10 interactors (score): RPL25 (0.999); EGD2 (0.999); RPS15 (0.993); RPS2 (0.992); RPL10 (0.989); RPL39 (0.986); RPL32 (0.985); RPL31A (0.984); RPS13 (0.984); RPL17A (0.982); RPP0 (0.982); RPL11A (0.972); RPS3 (0.97); RPL31B (0.969); RPL5 (0.968); BTT1 (0.96); RPL21B (0.958); RPS8B (0.958); RPL13A (0.957); RPL13B (0.957)
Homologues (species, bitscore): BTF3L4 (Homo sapiens, 97.8); Btf3l4 (Mus musculus, 97.8); btf3l4 (Danio rerio, 97.4); btf3l4 (Xenopus tropicalis, 99.0); bic (Drosophila melanogaster, 87.4); icd-1 (Caenorhabditis elegans, 91.3); AT1G73230 (Arabidopsis thaliana, 90.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:452926-453399:- | gene-YPL037C_AKU4011 | rna-NM_001183851.1_AKU4011 | cds-NP_015288.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:444020-444493:+ | gene-YPL037C_BG1 | rna-NM_001183851.1_BG1 | cds-NP_015288.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:529866-530339:- | gene-YPL037C_Bruggeman | rna-NM_001183851.1_Bruggeman | cds-NP_015288.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:569553-570026:- | gene-YPL037C_CAT1 | rna-NM_001183851.1_CAT1 | cds-NP_015288.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:456994-457467:- | gene-YPL037C_CBS1585 | rna-NM_001183851.1_CBS1585 | cds-NP_015288.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:471111-471584:- | gene-YPL037C_CBS436 | rna-NM_001183851.1_CBS436 | cds-NP_015288.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:461186-461659:- | gene-YPL037C_CBS6412 | rna-NM_001183851.1_CBS6412 | cds-NP_015288.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:453546-454019:- | gene-YPL037C_CBS6413 | rna-NM_001183851.1_CBS6413 | cds-NP_015288.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:481399-481872:- | gene-YPL037C_CENPK1137D | rna-NM_001183851.1_CENPK1137D | cds-NP_015288.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:451283-451756:- | gene-YPL037C_EthanolRed | rna-NM_001183851.1_EthanolRed | cds-NP_015288.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:459113-459586:- | gene-YPL037C_FaliES1 | rna-NM_001183851.1_FaliES1 | cds-NP_015288.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:67704-68177:- | gene-YPL037C_JAY291 | rna-NM_001183851.1_JAY291 | cds-NP_015288.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:470802-471275:- | gene-YPL037C_MUCL30387 | rna-NM_001183851.1_MUCL30387 | cds-NP_015288.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:469943-470416:- | gene-YPL037C_MUCL30388 | rna-NM_001183851.1_MUCL30388 | cds-NP_015288.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:450310-450783:- | gene-YPL037C_MUCL39482 | rna-NM_001183851.1_MUCL39482 | cds-NP_015288.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:508904-509377:- | gene-YPL037C_MUCL42920 | rna-NM_001183851.1_MUCL42920 | cds-NP_015288.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:481411-481884:- | gene-YPL037C_NCIM3186 | rna-NM_001183851.1_NCIM3186 | cds-NP_015288.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:457590-458063:- | gene-YPL037C_NCYC1407 | rna-NM_001183851.1_NCYC1407 | cds-NP_015288.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:464198-464671:- | gene-YPL037C_PE2H3 | rna-NM_001183851.1_PE2H3 | cds-NP_015288.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:463813-464286:- | gene-YPL037C_PE2H4 | rna-NM_001183851.1_PE2H4 | cds-NP_015288.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:481428-481901:- | gene-YPL037C_S288C | rna-NM_001183851.1_S288C | cds-NP_015288.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:24267-24740:- | gene-YPL037C_SA1 | rna-NM_001183851.1_SA1 | cds-NP_015288.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:458912-459385:- | gene-YPL037C_ThermosaccDry | rna-NM_001183851.1_ThermosaccDry | cds-NP_015288.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:473790-474263:- | gene-YPL037C_VR1 | rna-NM_001183851.1_VR1 | cds-NP_015288.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:458213-458686:- | gene-YPL037C_ZTW1 | rna-NM_001183851.1_ZTW1 | cds-NP_015288.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:458207-458680:- | gene-YPL037C_Sparadoxus | rna-NM_001183851.1_Sparadoxus | cds-NP_015288.1_Sparadoxus | 96.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |