Gene name: EFM1
Reference locus (S288C): YHL039W
Gene biotype: protein_coding
Description: Protein-lysine N-methyltransferase EFM1; Lysine methyltransferase; involved in the monomethylation of eEF1A (Tef1p/Tef2p); SET-domain family member; predicted involvement in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm
Top 10 interactors (score): EFM4 (0.952); EFM2 (0.903); EFM5 (0.872); EFM3 (0.821); SET6 (0.812); EFM6 (0.782); RKM5 (0.775); SET4 (0.751); CTM1 (0.747); TEF1 (0.712); RKM3 (0.705); SFM1 (0.698); SET5 (0.685); SSF2 (0.671); SET2 (0.656); SET3 (0.62); RPL42A (0.574); TEF2 (0.573); RSA4 (0.545); UTP14 (0.54)
Homologues (species, bitscore): SETD4 (Homo sapiens, 61.6); Setd4 (Mus musculus, 56.2); setd4 (Xenopus tropicalis, 54.3); LSMT-L (Arabidopsis thaliana, 55.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:16638-18395:+ | gene-YHL039W_AKU4011 | rna-NM_001179119.1_AKU4011 | cds-NP_011824.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:58429-60186:- | gene-YHL039W_BG1 | rna-NM_001179119.1_BG1 | cds-NP_011824.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:23302-25059:+ | gene-YHL039W_Bruggeman | rna-NM_001179119.1_Bruggeman | cds-NP_011824.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:17557-19314:+ | gene-YHL039W_CAT1 | rna-NM_001179119.1_CAT1 | cds-NP_011824.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:17241-18998:+ | gene-YHL039W_CBS1585 | rna-NM_001179119.1_CBS1585 | cds-NP_011824.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:9827-11584:+ | gene-YHL039W_CBS436 | rna-NM_001179119.1_CBS436 | cds-NP_011824.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:17190-18947:+ | gene-YHL039W_CBS6412 | rna-NM_001179119.1_CBS6412 | cds-NP_011824.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:16656-18413:+ | gene-YHL039W_CBS6413 | rna-NM_001179119.1_CBS6413 | cds-NP_011824.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:14948-16705:+ | gene-YHL039W_CENPK1137D | rna-NM_001179119.1_CENPK1137D | cds-NP_011824.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:16868-18625:+ | gene-YHL039W_EthanolRed | rna-NM_001179119.1_EthanolRed | cds-NP_011824.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:17192-18949:+ | gene-YHL039W_FaliES1 | rna-NM_001179119.1_FaliES1 | cds-NP_011824.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000157.1:9146-10903:+ | gene-YHL039W_JAY291 | rna-NM_001179119.1_JAY291 | cds-NP_011824.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:19136-20893:+ | gene-YHL039W_MUCL30387 | rna-NM_001179119.1_MUCL30387 | cds-NP_011824.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:20973-22730:+ | gene-YHL039W_MUCL30388 | rna-NM_001179119.1_MUCL30388 | cds-NP_011824.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:16232-17989:+ | gene-YHL039W_MUCL39482 | rna-NM_001179119.1_MUCL39482 | cds-NP_011824.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:20203-21960:+ | gene-YHL039W_MUCL42920 | rna-NM_001179119.1_MUCL42920 | cds-NP_011824.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:21665-23422:+ | gene-YHL039W_NCIM3186 | rna-NM_001179119.1_NCIM3186 | cds-NP_011824.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:15718-17475:+ | gene-YHL039W_NCYC1407 | rna-NM_001179119.1_NCYC1407 | cds-NP_011824.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:12009-13766:+ | gene-YHL039W_PE2H3 | rna-NM_001179119.1_PE2H3 | cds-NP_011824.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:19385-21142:+ | gene-YHL039W_PE2H4 | rna-NM_001179119.1_PE2H4 | cds-NP_011824.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:21783-23540:+ | gene-YHL039W_S288C | rna-NM_001179119.1_S288C | cds-NP_011824.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:6076-7833:+ | gene-YHL039W_SA1 | rna-NM_001179119.1_SA1 | cds-NP_011824.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:18281-20038:+ | gene-YHL039W_ThermosaccDry | rna-NM_001179119.1_ThermosaccDry | cds-NP_011824.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:22991-24748:+ | gene-YHL039W_VR1 | rna-NM_001179119.1_VR1 | cds-NP_011824.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:9495-11252:+ | gene-YHL039W_ZTW1 | rna-NM_001179119.1_ZTW1 | cds-NP_011824.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:15836-17593:+ | gene-YHL039W_Sparadoxus | rna-NM_001179119.1_Sparadoxus | cds-NP_011824.1_Sparadoxus | 86.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |