Gene name: EFG1
Reference locus (S288C): YGR271C-A
Gene biotype: protein_coding
Description: rRNA-processing protein EFG1; Essential protein required for maturation of 18S rRNA; null mutant is sensitive to hydroxyurea and is delayed in recovering from alpha-factor arrest; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus
Top 10 interactors (score): NOP53 (0.991); RRP36 (0.985); EBP2 (0.983); HCA4 (0.967); CGR1 (0.963); MAK16 (0.963); RRP8 (0.961); NOP4 (0.956); NOP14 (0.955); ROK1 (0.953); NOP16 (0.95); BUD22 (0.95); UTP11 (0.947); KRR1 (0.946); SLX9 (0.946); UTP23 (0.943); RRP1 (0.94); LTV1 (0.938); NOP9 (0.936); NOP15 (0.935)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:1003227-1003928:- | gene-YGR271C-A_AKU4011 | rna-NM_001184474.3_AKU4011 | cds-NP_076891.4_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:283235-283936:- | gene-YGR271C-A_BG1 | rna-NM_001184474.3_BG1 | cds-NP_076891.4_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1011750-1012451:- | gene-YGR271C-A_Bruggeman | rna-NM_001184474.3_Bruggeman | cds-NP_076891.4_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1011186-1011887:- | gene-YGR271C-A_CAT1 | rna-NM_001184474.3_CAT1 | cds-NP_076891.4_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1006097-1006798:- | gene-YGR271C-A_CBS1585 | rna-NM_001184474.3_CBS1585 | cds-NP_076891.4_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1009727-1010428:- | gene-YGR271C-A_CBS436 | rna-NM_001184474.3_CBS436 | cds-NP_076891.4_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:996987-997688:- | gene-YGR271C-A_CBS6412 | rna-NM_001184474.3_CBS6412 | cds-NP_076891.4_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:1003042-1003743:- | gene-YGR271C-A_CBS6413 | rna-NM_001184474.3_CBS6413 | cds-NP_076891.4_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1037470-1038171:- | gene-YGR271C-A_CENPK1137D | rna-NM_001184474.3_CENPK1137D | cds-NP_076891.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:991076-991777:- | gene-YGR271C-A_EthanolRed | rna-NM_001184474.3_EthanolRed | cds-NP_076891.4_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:995882-996583:- | gene-YGR271C-A_FaliES1 | rna-NM_001184474.3_FaliES1 | cds-NP_076891.4_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:33727-34429:+ | gene-YGR271C-A_JAY291 | rna-NM_001184474.3_JAY291 | cds-NP_076891.4_JAY291 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1009491-1010192:- | gene-YGR271C-A_MUCL30387 | rna-NM_001184474.3_MUCL30387 | cds-NP_076891.4_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1007623-1008324:- | gene-YGR271C-A_MUCL30388 | rna-NM_001184474.3_MUCL30388 | cds-NP_076891.4_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:1001203-1001904:- | gene-YGR271C-A_MUCL39482 | rna-NM_001184474.3_MUCL39482 | cds-NP_076891.4_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1019076-1019777:- | gene-YGR271C-A_MUCL42920 | rna-NM_001184474.3_MUCL42920 | cds-NP_076891.4_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1037800-1038501:- | gene-YGR271C-A_NCIM3186 | rna-NM_001184474.3_NCIM3186 | cds-NP_076891.4_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:996832-997533:- | gene-YGR271C-A_NCYC1407 | rna-NM_001184474.3_NCYC1407 | cds-NP_076891.4_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1022027-1022728:- | gene-YGR271C-A_PE2H3 | rna-NM_001184474.3_PE2H3 | cds-NP_076891.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1026866-1027567:- | gene-YGR271C-A_PE2H4 | rna-NM_001184474.3_PE2H4 | cds-NP_076891.4_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1037800-1038501:- | gene-YGR271C-A_S288C | rna-NM_001184474.3_S288C | cds-NP_076891.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:36018-36719:- | gene-YGR271C-A_SA1 | rna-NM_001184474.3_SA1 | cds-NP_076891.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1016402-1017103:- | gene-YGR271C-A_ThermosaccDry | rna-NM_001184474.3_ThermosaccDry | cds-NP_076891.4_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1122187-1122888:- | gene-YGR271C-A_VR1 | rna-NM_001184474.3_VR1 | cds-NP_076891.4_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:317813-318515:- | gene-YGR271C-A_ZTW1 | rna-NM_001184474.3_ZTW1 | cds-NP_076891.4_ZTW1 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1008482-1009180:- | gene-YGR271C-A_Sparadoxus | rna-NM_001184474.3_Sparadoxus | cds-NP_076891.4_Sparadoxus | 90.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |