Gene name: EDC3
Reference locus (S288C): YEL015W
Gene biotype: protein_coding
Description: Enhancer of mRNA-decapping protein 3; Non-essential conserved protein with a role in mRNA decapping; specifically affects the function of the decapping enzyme Dcp1p; mediates decay of the RPS28B mRNA via binding to both Rps28Bp (or Rps28Ap) and the RPS28B mRNA; mediates decay of the YRA1 mRNA by a different, translation-independent mechanism; localizes to cytoplasmic mRNA processing bodies; forms cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): DCP1 (0.999); LSM1 (0.999); DCP2 (0.999); XRN1 (0.999); LSM4 (0.999); DHH1 (0.999); PAT1 (0.998); SCD6 (0.998); LSM2 (0.995); LSM3 (0.994); LSM7 (0.994); PBY1 (0.981); NAM7 (0.974); LSM5 (0.965); PAB1 (0.963); LSM6 (0.958); RPS28B (0.956); CCR4 (0.955); EDC2 (0.946); CDC33 (0.923)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:120657-122312:+ | gene-YEL015W_AKU4011 | rna-NM_001178830.1_AKU4011 | cds-NP_010901.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:303653-305308:- | gene-YEL015W_BG1 | rna-NM_001178830.1_BG1 | cds-NP_010901.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:127183-128838:+ | gene-YEL015W_Bruggeman | rna-NM_001178830.1_Bruggeman | cds-NP_010901.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:122835-124490:+ | gene-YEL015W_CAT1 | rna-NM_001178830.1_CAT1 | cds-NP_010901.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:120598-122253:+ | gene-YEL015W_CBS1585 | rna-NM_001178830.1_CBS1585 | cds-NP_010901.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:122234-123889:+ | gene-YEL015W_CBS436 | rna-NM_001178830.1_CBS436 | cds-NP_010901.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:120877-122532:+ | gene-YEL015W_CBS6412 | rna-NM_001178830.1_CBS6412 | cds-NP_010901.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:125485-127140:+ | gene-YEL015W_CBS6413 | rna-NM_001178830.1_CBS6413 | cds-NP_010901.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:124485-126140:+ | gene-YEL015W_CENPK1137D | rna-NM_001178830.1_CENPK1137D | cds-NP_010901.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:120978-122633:+ | gene-YEL015W_EthanolRed | rna-NM_001178830.1_EthanolRed | cds-NP_010901.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:121237-122892:+ | gene-YEL015W_FaliES1 | rna-NM_001178830.1_FaliES1 | cds-NP_010901.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:40126-41781:+ | gene-YEL015W_JAY291 | rna-NM_001178830.1_JAY291 | cds-NP_010901.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:124903-126558:+ | gene-YEL015W_MUCL30387 | rna-NM_001178830.1_MUCL30387 | cds-NP_010901.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:120875-122530:+ | gene-YEL015W_MUCL30388 | rna-NM_001178830.1_MUCL30388 | cds-NP_010901.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:119962-121617:+ | gene-YEL015W_MUCL39482 | rna-NM_001178830.1_MUCL39482 | cds-NP_010901.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:124590-126245:+ | gene-YEL015W_MUCL42920 | rna-NM_001178830.1_MUCL42920 | cds-NP_010901.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:126628-128283:+ | gene-YEL015W_NCIM3186 | rna-NM_001178830.1_NCIM3186 | cds-NP_010901.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:125067-126722:+ | gene-YEL015W_NCYC1407 | rna-NM_001178830.1_NCYC1407 | cds-NP_010901.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:129093-130748:+ | gene-YEL015W_PE2H3 | rna-NM_001178830.1_PE2H3 | cds-NP_010901.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:125008-126663:+ | gene-YEL015W_PE2H4 | rna-NM_001178830.1_PE2H4 | cds-NP_010901.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:126629-128284:+ | gene-YEL015W_S288C | rna-NM_001178830.1_S288C | cds-NP_010901.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:114942-116597:- | gene-YEL015W_SA1 | rna-NM_001178830.1_SA1 | cds-NP_010901.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:121642-123297:+ | gene-YEL015W_ThermosaccDry | rna-NM_001178830.1_ThermosaccDry | cds-NP_010901.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:121184-122839:+ | gene-YEL015W_VR1 | rna-NM_001178830.1_VR1 | cds-NP_010901.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:120003-121658:+ | gene-YEL015W_ZTW1 | rna-NM_001178830.1_ZTW1 | cds-NP_010901.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:123426-125081:+ | gene-YEL015W_Sparadoxus | rna-NM_001178830.1_Sparadoxus | cds-NP_010901.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |